estExt_fgeneshDP_kg.C_230001 (Dictyostelium purpureum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_fgeneshDP_kg.C_230001 T05087_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.704
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.704
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.704
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.704
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.704
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.704
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.704
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgeneshDP_kg.C_230001 CCCH ZF 192 218
estExt_fgeneshDP_kg.C_230001 CCCH ZF 230 256

Links

Other CCCH ZF family RBPs
Other Dictyostelium purpureum RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.907
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.833
CMA121C Cyanidioschyzon merolae CMA121C N 0.759
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.759
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.759
EHI_008770 Entamoeba histolytica EHI_008770 N 0.741
EIN_295900 Entamoeba invadens EIN_295900 N 0.741
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.741
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.741
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.741
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.741
EDI_287240 Entamoeba dispar EDI_287240 N 0.741
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.741
0300010273 Ostreococcus tauri 0300010273 I 0.741
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.741
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.741
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.741
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.722
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.722
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.722
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.722
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.722
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.722
ECU01_0830 Encephalitozoon cuniculi ECU01_0830 N 0.722
PITG_03115 Phytophthora infestans PITG_03115 N 0.722
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.722
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.722
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.722
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.722
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.722
AAD24207 Xenopus laevis AAD24207 I 0.722
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.722
AAH82435 Xenopus laevis AAH82435 I 0.722
AAI08849 Xenopus laevis AAI08849 I 0.722
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.722
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.704
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.704
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.704
GM11580 Drosophila sechellia FBgn0166523 N 0.704
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.704
Ein01_0730 Encephalitozoon intestinalis Ein01_0730 N 0.704
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.704
GE17025 Drosophila yakuba FBgn0234511 N 0.704
GL13141 Drosophila persimilis FBgn0150747 N 0.704
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.704
GF21384 Drosophila ananassae FBgn0098386 N 0.704
GG17735 Drosophila erecta FBgn0109957 N 0.704
Tis11 Drosophila melanogaster FBgn0011837 N 0.704
zgc:114130 Danio rerio ENSDARG00000040725 I 0.704
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.704
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.704
estExt_fgenesh1_pg.C_110230 Phytophthora capsici estExt_fgenesh1_pg.C_110230 N 0.704
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.704
fgenesh1_pg.C_scaffold_30000016 Phytophthora ramorum fgenesh1_pg.C_scaffold_30000016 N 0.704
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.704
s_442346 Phytophthora sojae s_442346 N 0.704
AAEL002308 Aedes aegypti AAEL002308 I 0.704
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.704
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.704
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.704
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.704
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.704
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.704
ZFP36 Homo sapiens ENSG00000128016 D 0.704
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.704
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.704
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.704
zfp36l1b Danio rerio ENSDARG00000021443 I 0.704
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.704
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.704