CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA10177
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA10177
T09680_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA10177
CCHC ZF
555
572
IKCFRCGGIGHMSRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA23650
Caenorhabditis japonica
CJA23650
N
1.000
CJA27243
Caenorhabditis japonica
CJA27243
N
1.000
CRE09308
Caenorhabditis remanei
CRE09308
N
0.944
CJA02670
Caenorhabditis japonica
CJA02670
N
0.944
CRE13684
Caenorhabditis remanei
CRE13684
N
0.944
CJA05078
Caenorhabditis japonica
CJA05078
N
0.889
CJA26146
Caenorhabditis japonica
CJA26146
N
0.889
CJA11030
Caenorhabditis japonica
CJA11030
N
0.889
CJA29053
Caenorhabditis japonica
CJA29053
N
0.833
CJA10427
Caenorhabditis japonica
CJA10427
N
0.833
CJA04336
Caenorhabditis japonica
CJA04336
N
0.833
CJA13676
Caenorhabditis japonica
CJA13676
N
0.778
CRE03331
Caenorhabditis remanei
CRE03331
N
0.778
CJA28132
Caenorhabditis japonica
CJA28132
N
0.778
CRE29150
Caenorhabditis remanei
CRE29150
N
0.778
CJA07934
Caenorhabditis japonica
CJA07934
N
0.778
CJA00848
Caenorhabditis japonica
CJA00848
N
0.778
CJA13138
Caenorhabditis japonica
CJA13138
N
0.778
CRE06628
Caenorhabditis remanei
CRE06628
N
0.778
CJA28002
Caenorhabditis japonica
CJA28002
N
0.778
CJA18092
Caenorhabditis japonica
CJA18092
N
0.778
CJA21290
Caenorhabditis japonica
CJA21290
N
0.778
CJA15515
Caenorhabditis japonica
CJA15515
N
0.778
CJA15447
Caenorhabditis japonica
CJA15447
N
0.778
CRE30341
Caenorhabditis remanei
CRE30341
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA00142
Caenorhabditis japonica
CJA00142
N
0.722
CJA00955
Caenorhabditis japonica
CJA00955
N
0.722
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.722
CJA12763
Caenorhabditis japonica
CJA12763
N
0.722
CJA05814
Caenorhabditis japonica
CJA05814
N
0.722
CJA05850
Caenorhabditis japonica
CJA05850
N
0.722
CJA17448
Caenorhabditis japonica
CJA17448
N
0.722
CJA03777
Caenorhabditis japonica
CJA03777
N
0.722
CJA18651
Caenorhabditis japonica
CJA18651
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CJA02546
Caenorhabditis japonica
CJA02546
N
0.722
CRE19609
Caenorhabditis remanei
CRE19609
N
0.722
CJA25140
Caenorhabditis japonica
CJA25140
N
0.722
CJA23492
Caenorhabditis japonica
CJA23492
N
0.722
CJA24410
Caenorhabditis japonica
CJA24410
N
0.722
CJA24356
Caenorhabditis japonica
CJA24356
N
0.722
CJA23793
Caenorhabditis japonica
CJA23793
N
0.722
CJA23880
Caenorhabditis japonica
CJA23880
N
0.722
CJA13245
Caenorhabditis japonica
CJA13245
N
0.722
CJA27741
Caenorhabditis japonica
CJA27741
N
0.722
CJA13217
Caenorhabditis japonica
CJA13217
N
0.722
CJA19647
Caenorhabditis japonica
CJA19647
N
0.722
CJA21076
Caenorhabditis japonica
CJA21076
N
0.722
CJA21786
Caenorhabditis japonica
CJA21786
N
0.722
CJA23027
Caenorhabditis japonica
CJA23027
N
0.722
CJA22105
Caenorhabditis japonica
CJA22105
N
0.722
CJA13503
Caenorhabditis japonica
CJA13503
N
0.722