CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
recql4
(
Xenopus tropicalis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSXETG00000016582
T10588_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000036152
CCHC ZF
475
492
DTCFRCGGIGHWASQCPG
Links
Other
CCHC ZF
family RBPs
Other
Xenopus tropicalis
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI61707
Xenopus laevis
AAI61707
N
0.944
BAE48358
Xenopus laevis
BAE48358
N
0.944
AAY89585
Xenopus laevis
AAY89585
N
0.944
ENSMODG00000011014
Monodelphis domestica
ENSMODG00000011014
N
0.833
ENSACAG00000010589
Anolis carolinensis
ENSACAG00000010589
N
0.833
ENSPVAG00000006784
Pteropus vampyrus
ENSPVAG00000006784
N
0.778
ENSSSCG00000005898
Sus scrofa
ENSSSCG00000005898
N
0.778
ENSOANG00000003526
Ornithorhynchus anatinus
ENSOANG00000003526
N
0.778
ENSSSCG00000005884
Sus scrofa
ENSSSCG00000005884
N
0.778
Recql4
Rattus norvegicus
ENSRNOG00000032446
N
0.778
ENSMLUG00000011295
Myotis lucifugus
ENSMLUG00000011295
N
0.778
Recql4
Mus musculus
ENSMUSG00000033762
N
0.778
ENSMEUG00000001818
Macropus eugenii
ENSMEUG00000001818
N
0.778
ENSCAFG00000001569
Canis familiaris
ENSCAFG00000001569
N
0.722
ENSDNOG00000002674
Dasypus novemcinctus
ENSDNOG00000002674
N
0.722
ENSOPRG00000002588
Ochotona princeps
ENSOPRG00000002588
N
0.722