LOC_Os04g12000 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g12000 T11178_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g12000.1 CCHC ZF 301 318

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g70540 Oryza sativa LOC_Os01g70540 N 1.000
LOC_Os04g18244 Oryza sativa LOC_Os04g18244 N 1.000
LOC_Os10g07460 Oryza sativa LOC_Os10g07460 N 1.000
LOC_Os12g24290 Oryza sativa LOC_Os12g24290 N 0.889
LOC_Os11g35590 Oryza sativa LOC_Os11g35590 N 0.833
LOC_Os09g16100 Oryza sativa LOC_Os09g16100 N 0.778
LOC_Os08g28530 Oryza sativa LOC_Os08g28530 N 0.778
LOC_Os11g45610 Oryza sativa LOC_Os11g45610 N 0.778
LOC_Os12g07910 Oryza sativa LOC_Os12g07910 N 0.778
LOC_Os10g29420 Oryza sativa LOC_Os10g29420 N 0.778
LOC_Os10g07578 Oryza sativa LOC_Os10g07578 N 0.778
LOC_Os04g24570 Oryza sativa LOC_Os04g24570 N 0.778
LOC_Os05g03600 Oryza sativa LOC_Os05g03600 N 0.778
LOC_Os07g05600 Oryza sativa LOC_Os07g05600 N 0.778
fgenesh1_pg.C_scaffold_58000098 Phytophthora ramorum fgenesh1_pg.C_scaffold_58000098 N 0.722
LOC_Os03g30810 Oryza sativa LOC_Os03g30810 N 0.722
fgenesh1_pg.C_scaffold_49000015 Phytophthora ramorum fgenesh1_pg.C_scaffold_49000015 N 0.722
fgenesh1_pg.C_scaffold_32000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_32000002 N 0.722
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.722
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.722
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.722
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.722
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.722
LOC_Os02g38000 Oryza sativa LOC_Os02g38000 N 0.722
fgenesh1_pg.C_scaffold_737000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_737000002 N 0.722
LOC_Os01g16850 Oryza sativa LOC_Os01g16850 N 0.722
LOC_Os01g28490 Oryza sativa LOC_Os01g28490 N 0.722
LOC_Os02g06810 Oryza sativa LOC_Os02g06810 N 0.722
LOC_Os01g50090 Oryza sativa LOC_Os01g50090 N 0.722
LOC_Os02g17720 Oryza sativa LOC_Os02g17720 N 0.722
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.722
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.722
fgenesh1_pg.C_scaffold_937000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_937000002 N 0.722
DGIL_AUG5s9216g3t1 Acyrtosiphon pisum DGIL_AUG5s9216g3t1 N 0.722
LOC_Os02g20200 Oryza sativa LOC_Os02g20200 N 0.722
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.722
LOC_Os12g40060 Oryza sativa LOC_Os12g40060 N 0.722
LOC_Os09g14500 Oryza sativa LOC_Os09g14500 N 0.722
LOC_Os09g29810 Oryza sativa LOC_Os09g29810 N 0.722
LOC_Os10g03110 Oryza sativa LOC_Os10g03110 N 0.722
LOC_Os10g41610 Oryza sativa LOC_Os10g41610 N 0.722
LOC_Os08g15010 Oryza sativa LOC_Os08g15010 N 0.722
LOC_Os06g41690 Oryza sativa LOC_Os06g41690 N 0.722
LOC_Os04g35870 Oryza sativa LOC_Os04g35870 N 0.722
LOC_Os04g41520 Oryza sativa LOC_Os04g41520 N 0.722
LOC_Os06g05680 Oryza sativa LOC_Os06g05680 N 0.722
LOC_Os06g06802 Oryza sativa LOC_Os06g06802 N 0.722
LOC_Os11g06960 Oryza sativa LOC_Os11g06960 N 0.722
LOC_Os11g11860 Oryza sativa LOC_Os11g11860 N 0.722
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.722
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.722
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.722
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.722
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.722
LOC_Os04g13350 Oryza sativa LOC_Os04g13350 N 0.722
LOC_Os11g43560 Oryza sativa LOC_Os11g43560 N 0.722
LOC_Os11g44190 Oryza sativa LOC_Os11g44190 N 0.722
LOC_Os12g09260 Oryza sativa LOC_Os12g09260 N 0.722
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 0.722