CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s9216g3t1
(
Acyrtosiphon pisum
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
DGIL_AUG5s9216g3t1
T08946_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s9216g3t1
CCHC ZF
76
93
KVCFHCGKSGHWAKDCRS
Links
Other
CCHC ZF
family RBPs
Other
Acyrtosiphon pisum
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os10g37468
Oryza sativa
LOC_Os10g37468
N
0.722
LOC_Os10g36460
Oryza sativa
LOC_Os10g36460
N
0.722
LOC_Os10g34890
Oryza sativa
LOC_Os10g34890
N
0.722
LOC_Os10g33570
Oryza sativa
LOC_Os10g33570
N
0.722
LOC_Os11g01700
Oryza sativa
LOC_Os11g01700
N
0.722
LOC_Os11g16610
Oryza sativa
LOC_Os11g16610
N
0.722
LOC_Os11g46090
Oryza sativa
LOC_Os11g46090
N
0.722
LOC_Os11g45610
Oryza sativa
LOC_Os11g45610
N
0.722
LOC_Os11g35800
Oryza sativa
LOC_Os11g35800
N
0.722
LOC_Os11g29610
Oryza sativa
LOC_Os11g29610
N
0.722
LOC_Os10g31220
Oryza sativa
LOC_Os10g31220
N
0.722
LOC_Os10g29420
Oryza sativa
LOC_Os10g29420
N
0.722
LOC_Os08g28530
Oryza sativa
LOC_Os08g28530
N
0.722
LOC_Os08g14340
Oryza sativa
LOC_Os08g14340
N
0.722
LOC_Os08g14170
Oryza sativa
LOC_Os08g14170
N
0.722
LOC_Os08g06850
Oryza sativa
LOC_Os08g06850
N
0.722
LOC_Os09g16100
Oryza sativa
LOC_Os09g16100
N
0.722
LOC_Os09g18080
Oryza sativa
LOC_Os09g18080
N
0.722
LOC_Os10g19290
Oryza sativa
LOC_Os10g19290
N
0.722
LOC_Os10g07578
Oryza sativa
LOC_Os10g07578
N
0.722
LOC_Os10g07460
Oryza sativa
LOC_Os10g07460
N
0.722
LOC_Os10g03300
Oryza sativa
LOC_Os10g03300
N
0.722
LOC_Os12g03304
Oryza sativa
LOC_Os12g03304
N
0.722
LOC_Os12g07910
Oryza sativa
LOC_Os12g07910
N
0.722
SS1G_03724
Sclerotinia sclerotiorum
SS1G_03724
N
0.722
ZYRO0G22132g
Zygosaccharomyces rouxii
ZYRO0G22132g
N
0.722
LOC_Os12g41080
Oryza sativa
LOC_Os12g41080
N
0.722
LOC_Os12g36260
Oryza sativa
LOC_Os12g36260
N
0.722
SS1G_04258
Sclerotinia sclerotiorum
SS1G_04258
N
0.722
SS1G_05465
Sclerotinia sclerotiorum
SS1G_05465
N
0.722
SS1G_14517
Sclerotinia sclerotiorum
SS1G_14517
N
0.722
SS1G_14025
Sclerotinia sclerotiorum
SS1G_14025
N
0.722
SS1G_09531
Sclerotinia sclerotiorum
SS1G_09531
N
0.722
SS1G_06437
Sclerotinia sclerotiorum
SS1G_06437
N
0.722
LOC_Os12g34580
Oryza sativa
LOC_Os12g34580
N
0.722
LOC_Os12g26520
Oryza sativa
LOC_Os12g26520
N
0.722
LOC_Os12g11970
Oryza sativa
LOC_Os12g11970
N
0.722
LOC_Os12g11730
Oryza sativa
LOC_Os12g11730
N
0.722
LOC_Os12g10500
Oryza sativa
LOC_Os12g10500
N
0.722
LOC_Os12g09400
Oryza sativa
LOC_Os12g09400
N
0.722
LOC_Os12g12040
Oryza sativa
LOC_Os12g12040
N
0.722
LOC_Os12g13780
Oryza sativa
LOC_Os12g13780
N
0.722
LOC_Os12g24290
Oryza sativa
LOC_Os12g24290
N
0.722
LOC_Os12g18250
Oryza sativa
LOC_Os12g18250
N
0.722
LOC_Os12g16730
Oryza sativa
LOC_Os12g16730
N
0.722
LOC_Os12g15290
Oryza sativa
LOC_Os12g15290
N
0.722
LOC_Os08g05150
Oryza sativa
LOC_Os08g05150
N
0.722
LOC_Os07g39380
Oryza sativa
LOC_Os07g39380
N
0.722
LOC_Os03g29130
Oryza sativa
LOC_Os03g29130
N
0.722
LOC_Os03g14349
Oryza sativa
LOC_Os03g14349
N
0.722
LOC_Os03g11850
Oryza sativa
LOC_Os03g11850
N
0.722
LOC_Os03g02500
Oryza sativa
LOC_Os03g02500
N
0.722
LOC_Os03g30810
Oryza sativa
LOC_Os03g30810
N
0.722
LOC_Os03g31200
Oryza sativa
LOC_Os03g31200
N
0.722
LOC_Os04g13240
Oryza sativa
LOC_Os04g13240
N
0.722
LOC_Os04g12000
Oryza sativa
LOC_Os04g12000
N
0.722
LOC_Os03g56676
Oryza sativa
LOC_Os03g56676
N
0.722
LOC_Os03g31620
Oryza sativa
LOC_Os03g31620
N
0.722
LOC_Os02g27320
Oryza sativa
LOC_Os02g27320
N
0.722
LOC_Os02g18310
Oryza sativa
LOC_Os02g18310
N
0.722
LOC_Os01g28760
Oryza sativa
LOC_Os01g28760
N
0.722
LOC_Os01g28490
Oryza sativa
LOC_Os01g28490
N
0.722
LOC_Os01g16270
Oryza sativa
LOC_Os01g16270
N
0.722
LOC_Os01g09050
Oryza sativa
LOC_Os01g09050
N
0.722
LOC_Os01g32990
Oryza sativa
LOC_Os01g32990
N
0.722
LOC_Os01g37410
Oryza sativa
LOC_Os01g37410
N
0.722
LOC_Os02g14370
Oryza sativa
LOC_Os02g14370
N
0.722
LOC_Os01g70540
Oryza sativa
LOC_Os01g70540
N
0.722
LOC_Os01g58810
Oryza sativa
LOC_Os01g58810
N
0.722
LOC_Os01g55660
Oryza sativa
LOC_Os01g55660
N
0.722
LOC_Os04g18244
Oryza sativa
LOC_Os04g18244
N
0.722
LOC_Os04g19950
Oryza sativa
LOC_Os04g19950
N
0.722
LOC_Os06g35840
Oryza sativa
LOC_Os06g35840
N
0.722
LOC_Os06g34090
Oryza sativa
LOC_Os06g34090
N
0.722
LOC_Os06g29600
Oryza sativa
LOC_Os06g29600
N
0.722
LOC_Os06g25910
Oryza sativa
LOC_Os06g25910
N
0.722
LOC_Os06g42300
Oryza sativa
LOC_Os06g42300
N
0.722
LOC_Os06g47810
Oryza sativa
LOC_Os06g47810
N
0.722
LOC_Os07g38350
Oryza sativa
LOC_Os07g38350
N
0.722
LOC_Os07g36270
Oryza sativa
LOC_Os07g36270
N
0.722
LOC_Os07g27900
Oryza sativa
LOC_Os07g27900
N
0.722
LOC_Os07g05600
Oryza sativa
LOC_Os07g05600
N
0.722
LOC_Os06g23860
Oryza sativa
LOC_Os06g23860
N
0.722
LOC_Os06g19040
Oryza sativa
LOC_Os06g19040
N
0.722
LOC_Os05g03600
Oryza sativa
LOC_Os05g03600
N
0.722
LOC_Os04g34960
Oryza sativa
LOC_Os04g34960
N
0.722
LOC_Os04g24570
Oryza sativa
LOC_Os04g24570
N
0.722
LOC_Os04g24350
Oryza sativa
LOC_Os04g24350
N
0.722
LOC_Os05g07190
Oryza sativa
LOC_Os05g07190
N
0.722
LOC_Os05g15810
Oryza sativa
LOC_Os05g15810
N
0.722
LOC_Os06g13500
Oryza sativa
LOC_Os06g13500
N
0.722
LOC_Os06g05460
Oryza sativa
LOC_Os06g05460
N
0.722
LOC_Os05g27770
Oryza sativa
LOC_Os05g27770
N
0.722
LOC_Os01g06810
Oryza sativa
LOC_Os01g06810
N
0.722