LOC_Os11g06960 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os11g06960 T12337_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g06960.1 CCHC ZF 293 310

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os12g07910 Oryza sativa LOC_Os12g07910 N 0.944
LOC_Os07g05600 Oryza sativa LOC_Os07g05600 N 0.944
LOC_Os04g24570 Oryza sativa LOC_Os04g24570 N 0.944
LOC_Os11g45610 Oryza sativa LOC_Os11g45610 N 0.944
LOC_Os10g29420 Oryza sativa LOC_Os10g29420 N 0.944
LOC_Os05g03600 Oryza sativa LOC_Os05g03600 N 0.889
LOC_Os08g28530 Oryza sativa LOC_Os08g28530 N 0.889
LOC_Os10g07578 Oryza sativa LOC_Os10g07578 N 0.889
LOC_Os09g16100 Oryza sativa LOC_Os09g16100 N 0.889
LOC_Os03g30810 Oryza sativa LOC_Os03g30810 N 0.889
LOC_Os11g11860 Oryza sativa LOC_Os11g11860 N 0.889
LOC_Os02g20200 Oryza sativa LOC_Os02g20200 N 0.833
LOC_Os02g17720 Oryza sativa LOC_Os02g17720 N 0.833
LOC_Os02g06810 Oryza sativa LOC_Os02g06810 N 0.833
LOC_Os04g13350 Oryza sativa LOC_Os04g13350 N 0.833
LOC_Os05g48170 Oryza sativa LOC_Os05g48170 N 0.833
LOC_Os06g05680 Oryza sativa LOC_Os06g05680 N 0.833
LOC_Os12g40060 Oryza sativa LOC_Os12g40060 N 0.833
LOC_Os04g41520 Oryza sativa LOC_Os04g41520 N 0.833
LOC_Os04g35870 Oryza sativa LOC_Os04g35870 N 0.833
LOC_Os01g16850 Oryza sativa LOC_Os01g16850 N 0.833
LOC_Os06g06802 Oryza sativa LOC_Os06g06802 N 0.833
LOC_Os01g50090 Oryza sativa LOC_Os01g50090 N 0.833
LOC_Os09g14500 Oryza sativa LOC_Os09g14500 N 0.833
LOC_Os11g44190 Oryza sativa LOC_Os11g44190 N 0.833
LOC_Os09g29810 Oryza sativa LOC_Os09g29810 N 0.833
LOC_Os12g09260 Oryza sativa LOC_Os12g09260 N 0.833
LOC_Os10g41610 Oryza sativa LOC_Os10g41610 N 0.833
LOC_Os08g15010 Oryza sativa LOC_Os08g15010 N 0.833
LOC_Os04g22050 Oryza sativa LOC_Os04g22050 N 0.778
LOC_Os10g03110 Oryza sativa LOC_Os10g03110 N 0.778
LOC_Os10g17540 Oryza sativa LOC_Os10g17540 N 0.778
LOC_Os04g49290 Oryza sativa LOC_Os04g49290 N 0.778
LOC_Os11g43560 Oryza sativa LOC_Os11g43560 N 0.778
LOC_Os12g10900 Oryza sativa LOC_Os12g10900 N 0.778
LOC_Os11g10630 Oryza sativa LOC_Os11g10630 N 0.778
LOC_Os08g29980 Oryza sativa LOC_Os08g29980 N 0.778
LOC_Os06g28330 Oryza sativa LOC_Os06g28330 N 0.778
LOC_Os07g18970 Oryza sativa LOC_Os07g18970 N 0.778
LOC_Os06g41690 Oryza sativa LOC_Os06g41690 N 0.778
LOC_Os07g18730 Oryza sativa LOC_Os07g18730 N 0.778
LOC_Os10g07460 Oryza sativa LOC_Os10g07460 N 0.722
LOC_Os07g17260 Oryza sativa LOC_Os07g17260 N 0.722
LOC_Os04g18244 Oryza sativa LOC_Os04g18244 N 0.722
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.722
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.722
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.722
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.722
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 0.722
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.722
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.722
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.722
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.722
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.722
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.722
LOC_Os04g12000 Oryza sativa LOC_Os04g12000 N 0.722
LOC_Os04g12100 Oryza sativa LOC_Os04g12100 N 0.722
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.722
LOC_Os04g07580 Oryza sativa LOC_Os04g07580 N 0.722
LOC_Os01g70540 Oryza sativa LOC_Os01g70540 N 0.722
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.722
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.722
PGTG_05870 Puccinia graminis PGTG_05870 N 0.722
Aqu1.204126 Amphimedon queenslandica Aqu1.204126 N 0.722