CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc07977
(
Meloidogyne incognita
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Minc07977
T16117_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc07977
CCHC ZF
333
350
KRCYYCGKPGHFARDCYS
Links
Other
CCHC ZF
family RBPs
Other
Meloidogyne incognita
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc06425
Meloidogyne incognita
Minc06425
N
0.889
AT4G06510
Arabidopsis thaliana
AT4G06510-TAIR-G
N
0.722
PK25691.1
Cannabis sativa
PK25691.1
N
0.722
TGGT1_064600
Toxoplasma gondii
TGGT1_064600
N
0.722
TGME49_121560
Toxoplasma gondii
TGME49_121560
N
0.722
177549
Helobdella robusta
177549
N
0.722
PK01187.1
Cannabis sativa
PK01187.1
N
0.722
PK00617.1
Cannabis sativa
PK00617.1
N
0.722
SS1G_05465
Sclerotinia sclerotiorum
SS1G_05465
N
0.722
SS1G_04258
Sclerotinia sclerotiorum
SS1G_04258
N
0.722
SS1G_06437
Sclerotinia sclerotiorum
SS1G_06437
N
0.722
SS1G_09531
Sclerotinia sclerotiorum
SS1G_09531
N
0.722
SS1G_14517
Sclerotinia sclerotiorum
SS1G_14517
N
0.722
SS1G_14025
Sclerotinia sclerotiorum
SS1G_14025
N
0.722
SS1G_03724
Sclerotinia sclerotiorum
SS1G_03724
N
0.722