PDK_20s1528451g001 (Phoenix dactylifera)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 PDK_20s1528451g001 T16191_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1528451g001 CCHC ZF 209 226

Links

Other CCHC ZF family RBPs
Other Phoenix dactylifera RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.833
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.778
30128.m008637 Ricinus communis 30128.m008637 N 0.778
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.778
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.778
mgf012893m Mimulus guttatus mgf012893m N 0.778
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.778
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.778
SB01G005340 Sorghum bicolor Sb01g005340 N 0.778
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.778
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.778
ppa000881m Prunus persica ppa000881m N 0.778
MDP0000127462 Malus x domestica MDP0000127462 N 0.778
MDP0000274866 Malus x domestica MDP0000274866 N 0.778
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.778
MDP0000214139 Malus x domestica MDP0000214139 N 0.778
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.722
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.722
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.722
Cucsa.133490 Cucumis sativus Cucsa.133490 N 0.722
GSVIVG00021865001 Vitis vinifera GSVIVG00021865001 N 0.722
AIN1 Arabidopsis thaliana AT1G54490-TAIR-G N 0.722
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.722
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.722
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.722
cassava20905.m1 Manihot esculenta cassava20905.m1 N 0.722
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.722