Medtr1g096550 (Medicago truncatula)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Medtr1g096550 T15073_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g096550.1 CCHC ZF 183 200

Links

Other CCHC ZF family RBPs
Other Medicago truncatula RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.833
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.833
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.778
AIN1 Arabidopsis thaliana AT1G54490-TAIR-G N 0.778
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.778
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.778
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.778
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.722
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.722
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.722
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.722
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.722
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.722
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.722
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.722
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.722
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.722
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.722
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.722
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.722
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.722
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.722
PK11796.1 Cannabis sativa PK11796.1 N 0.722
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.722
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.722
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.722
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.722
SB01G005340 Sorghum bicolor Sb01g005340 N 0.722
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.722
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.722
30170.m014167 Ricinus communis 30170.m014167 N 0.722
30128.m008637 Ricinus communis 30128.m008637 N 0.722
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.722
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.722