CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ13199
(
Drosophila virilis
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0200425
T17101_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0227616
CSD
54
121
VVSGVVKSFSRTKGHGFITPHGGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKFEKHQAVHVQIS
Links
Other
CSD
family RBPs
Other
Drosophila virilis
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI13370
Drosophila mojavensis
FBgn0136127
N
0.956
GH16224
Drosophila grimshawi
FBgn0123695
N
0.956
GG13577
Drosophila erecta
FBgn0105847
N
0.941
GE19874
Drosophila yakuba
FBgn0237204
N
0.941
GF23931
Drosophila ananassae
FBgn0100925
N
0.926
GK16809
Drosophila willistoni
FBgn0218809
N
0.926
CG9705
Drosophila melanogaster
FBgn0036661
N
0.926
GD14664
Drosophila simulans
FBgn0186342
N
0.926
GM25657
Drosophila sechellia
FBgn0180514
N
0.926
GL20690
Drosophila persimilis
FBgn0158285
N
0.912
GA21978-RA
Drosophila pseudoobscura
FBgn0081963
N
0.912
AGAP005641
Anopheles gambiae
AGAP005641
N
0.735
PHUM557470
Pediculus humanus
PHUM557470
N
0.706
CpipJ_CPIJ008535
Culex pipiens
CpipJ_CPIJ008535
N
0.706
CPIJ008535
Culex quinquefasciatus
CPIJ008535
N
0.706