CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS1
(
Dasypus novemcinctus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSDNOG00000003761
T18645_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.847
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.847
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000002898
KH
169
240
FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAY
Links
Other
KH
family RBPs
Other
Dasypus novemcinctus
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Khdrbs1
Dipodomys ordii
ENSDORG00000011530
I
1.000
KHDRBS1
Microcebus murinus
ENSMICG00000001428
I
0.986
ENSCJAG00000003689
Callithrix jacchus
ENSCJAG00000003689
I
0.945
KHDRBS1
Tupaia belangeri
ENSTBEG00000016857
I
0.847
KHDRBS1
Tarsius syrichta
ENSTSYG00000004921
I
0.847
KHDRBS1
Spermophilus tridecemlineatus
ENSSTOG00000014138
I
0.847
KHDRBS1
Cavia porcellus
ENSCPOG00000024148
I
0.847
ENSPPYG00000001605
Pongo pygmaeus
ENSPPYG00000001605
I
0.847
KHDRBS1
Tursiops truncatus
ENSTTRG00000009637
I
0.847
KHDRBS1
Pteropus vampyrus
ENSPVAG00000013289
I
0.847
KHDRBS1
Vicugna pacos
ENSVPAG00000006966
I
0.847
KHDRBS1
Canis familiaris
ENSCAFG00000010777
I
0.847
ENSCHOG00000006973
Choloepus hoffmanni
ENSCHOG00000006973
I
0.847
Q29RQ2_BOVIN
Bos taurus
ENSBTAG00000012497
I
0.847
Ame_R010128
Ailuropoda melanoleuca
Ame_R010128
I
0.847
KHDRBS1
Procavia capensis
ENSPCAG00000009844
I
0.847
LOC100414412
Callithrix jacchus
ENSCJAG00000006580
I
0.847
KHDRBS1
Pan troglodytes
ENSPTRG00000000469
I
0.847
KHDRBS1
Gorilla gorilla
ENSGGOG00000008633
I
0.847
KHDRBS1
Loxodonta africana
ENSLAFG00000009414
I
0.847
KHDRBS1
Meleagris gallopavo
ENSMGAG00000004455
I
0.847
KHDR1_CHICK
Gallus gallus
ENSGALG00000003272
I
0.847
KHDRBS1
Homo sapiens
ENSG00000121774
D
0.847
KHDRBS1
Equus caballus
ENSECAG00000019346
I
0.847
KHDRBS1
Felis catus
ENSFCAG00000006511
I
0.847
XM_001365874.1
Monodelphis domestica
ENSMODG00000017551
I
0.847
KHDRBS1
Macaca mulatta
ENSMMUG00000023438
I
0.847
KHDRBS1
Oryctolagus cuniculus
ENSOCUG00000007654
I
0.847
KHDRBS1
Ochotona princeps
ENSOPRG00000005131
I
0.847
Khdrbs1
Mus musculus
ENSMUSG00000028790
D
0.847
KHDRBS1
Ornithorhynchus anatinus
ENSOANG00000012357
I
0.847
KHDRBS1
Anolis carolinensis
ENSACAG00000011693
I
0.835
khdrbs1
Xenopus tropicalis
ENSXETG00000005246
I
0.824
KHDRBS1
Taeniopygia guttata
ENSTGUG00000017346
I
0.824
KHDRBS1
Sorex araneus
ENSSARG00000008479
I
0.812
KHDRBS3
Sorex araneus
ENSSARG00000011751
I
0.764
Khdrbs3
Rattus norvegicus
ENSRNOG00000009539
I
0.764
KHDRBS2
Myotis lucifugus
ENSMLUG00000005484
I
0.750
Ame_R015982
Ailuropoda melanoleuca
Ame_R015982
I
0.750
KHDRBS2
Procavia capensis
ENSPCAG00000001426
I
0.730
khdrbs1a
Danio rerio
ENSDARG00000052856
I
0.706
KHDRBS1
Oryzias latipes
ENSORLG00000020884
I
0.706