CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS2
(
Procavia capensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPCAG00000001426
T19303_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.864
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.783
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000001319
KH
71
140
PKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPP
Links
Other
KH
family RBPs
Other
Procavia capensis
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHDRBS2
Myotis lucifugus
ENSMLUG00000005484
I
0.971
Ame_R015982
Ailuropoda melanoleuca
Ame_R015982
I
0.958
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.864
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.864
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.864
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.864
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.864
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.864
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.864
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.864
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.864
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.864
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.864
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.864
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.864
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.864
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.864
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.864
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.864
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.864
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.864
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.864
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.864
KHDRBS3
Sorex araneus
ENSSARG00000011751
I
0.863
Khdrbs3
Rattus norvegicus
ENSRNOG00000009539
I
0.863
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.852
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.852
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.852
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.852
KHDRBS3
Tarsius syrichta
ENSTSYG00000004106
I
0.822
khdrbs2
Danio rerio
ENSDARG00000069469
I
0.815
KHDRBS2
Takifugu rubripes
ENSTRUG00000015760
I
0.815
KHDRBS2
Gasterosteus aculeatus
ENSGACG00000006097
I
0.802
KHDRBS3
Homo sapiens
ENSG00000131773
D
0.783
KHDRBS3
Sus scrofa
ENSSSCG00000005941
I
0.783
KHDRBS3
Otolemur garnettii
ENSOGAG00000005150
I
0.783
Q6J4Q8_9PRIM
Gorilla gorilla
ENSGGOG00000000940
I
0.783
LOC100399263
Callithrix jacchus
ENSCJAG00000004331
I
0.783
Q6J4Q6_MACMU
Macaca mulatta
ENSMMUG00000022248
I
0.783
KHDRBS3
Monodelphis domestica
ENSMODG00000000975
I
0.783
Q6J4Q9_PANTR
Pan troglodytes
ENSPTRG00000020608
I
0.783
KHDRBS3
Loxodonta africana
ENSLAFG00000004849
I
0.783
KHDRBS3
Tupaia belangeri
ENSTBEG00000004773
I
0.783
KHDRBS3
Tursiops truncatus
ENSTTRG00000001270
I
0.783
A4FV24_BOVIN
Bos taurus
ENSBTAG00000002181
I
0.783
KHDRBS3
Canis familiaris
ENSCAFG00000001166
I
0.783
KHDRBS3
Ornithorhynchus anatinus
ENSOANG00000014074
I
0.783
KHDRBS3
Cavia porcellus
ENSCPOG00000000342
I
0.783
KHDRBS3
Echinops telfairi
ENSETEG00000004701
I
0.783
KHDRBS3
Anolis carolinensis
ENSACAG00000012042
I
0.783
Ame_R010681
Ailuropoda melanoleuca
Ame_R010681
I
0.783
Khdrbs3
Mus musculus
ENSMUSG00000022332
I
0.783
LOC100058116
Equus caballus
ENSECAG00000010194
I
0.783
khdrbs3
Xenopus tropicalis
ENSXETG00000009227
I
0.780
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.778
KHDRBS3
Spermophilus tridecemlineatus
ENSSTOG00000008710
I
0.771
KHDRBS3
Gallus gallus
ENSGALG00000016203
I
0.771
KHDRBS3
Ochotona princeps
ENSOPRG00000000404
I
0.771
KHDRBS3
Meleagris gallopavo
ENSMGAG00000012888
I
0.771
KHDRBS3
Oryctolagus cuniculus
ENSOCUG00000000743
I
0.771
KHDRBS3
Taeniopygia guttata
ENSTGUG00000012611
I
0.771
KHDRBS3
Pteropus vampyrus
ENSPVAG00000017021
I
0.762
KHDRBS1
Microcebus murinus
ENSMICG00000001428
I
0.743
KHDRBS3
Oryzias latipes
ENSORLG00000013441
I
0.735
KHDRBS3
Takifugu rubripes
ENSTRUG00000013451
I
0.735
KHDRBS3
Tetraodon nigroviridis
ENSTNIG00000014021
I
0.735
KHDRBS3
Gasterosteus aculeatus
ENSGACG00000008847
I
0.735
KHDRBS1
Dasypus novemcinctus
ENSDNOG00000003761
I
0.730
Khdrbs1
Dipodomys ordii
ENSDORG00000011530
I
0.730
ENSCJAG00000003689
Callithrix jacchus
ENSCJAG00000003689
I
0.716