XM_002892469.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_kg.1__1021__AT1G09660.1 T20064_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1021__AT1G09660.1 KH 148 207

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G09660 Arabidopsis thaliana AT1G09660-TAIR-G N 1.000
GSVIVG00023231001 Vitis vinifera GSVIVG00023231001 N 0.852
Medtr2g005410 Medicago truncatula Medtr2g005410 N 0.833
LOC_Os01g66300 Oryza sativa LOC_Os01g66300 N 0.817
BGIOSIBCE004530 Oryza indica BGIOSIBCE004530 N 0.817
SB03G042090 Sorghum bicolor Sb03g042090 N 0.800
BRADI2G57220 Brachypodium distachyon BRADI2G57220 N 0.787
cassava13904.valid.m1 Manihot esculenta cassava13904.valid.m1 N 0.785
GRMZM2G125531 Zea mays GRMZM2G125531 N 0.778
Cucsa.114230 Cucumis sativus Cucsa.114230 N 0.767
LOC_Os05g34670 Oryza sativa LOC_Os05g34670 N 0.738
BGIOSIBCE019075 Oryza indica BGIOSIBCE019075 N 0.738
XM_002867517.1 Arabidopsis lyrata fgenesh2_kg.7__1597__AT4G26480.1 N 0.738
cassava13307.valid.m1 Manihot esculenta cassava13307.valid.m1 N 0.733
AT4G26480 Arabidopsis thaliana AT4G26480-TAIR-G N 0.733
cassava13306.valid.m1 Manihot esculenta cassava13306.valid.m1 N 0.733
cassava410.valid.m1 Manihot esculenta cassava410.valid.m1 N 0.717
cassava411.valid.m1 Manihot esculenta cassava411.valid.m1 N 0.717
cassava412.valid.m1 Manihot esculenta cassava412.valid.m1 N 0.717
e_gw1.23.297.1 Selaginella moellendorfii e_gw1.23.297.1 N 0.717
estExt_fgenesh1_pm.C_2690009 Physcomitrella patens estExt_fgenesh1_pm.C_2690009 N 0.717
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.705
GRMZM2G092182 Zea mays GRMZM2G092182 N 0.705