cassava410.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava410.valid.m1 T20687_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava410.valid.m1 KH 28 87

Links

Other KH family RBPs
Other Manihot esculenta RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava411.valid.m1 Manihot esculenta cassava411.valid.m1 N 1.000
cassava412.valid.m1 Manihot esculenta cassava412.valid.m1 N 1.000
XM_002867517.1 Arabidopsis lyrata fgenesh2_kg.7__1597__AT4G26480.1 N 0.902
AT4G26480 Arabidopsis thaliana AT4G26480-TAIR-G N 0.900
MDP0000306088 Malus x domestica MDP0000306088 N 0.873
Medtr3g016780 Medicago truncatula Medtr3g016780 N 0.869
AT5G56140 Arabidopsis thaliana AT5G56140-TAIR-G N 0.855
XM_002864390.1 Arabidopsis lyrata fgenesh2_kg.8__1516__AT5G56140.1 N 0.855
mgf006761m Mimulus guttatus mgf006761m N 0.852
chr3.CM0047.410.nc Lotus japonicus chr3.CM0047.410.nc N 0.852
GRMZM2G092182 Zea mays GRMZM2G092182 N 0.852
ppa009341m Prunus persica ppa009341m N 0.836
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.833
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.821
Cucsa.334300 Cucumis sativus Cucsa.334300 N 0.815
cassava30587.valid.m1 Manihot esculenta cassava30587.valid.m1 N 0.806
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.803
SB04G029520 Sorghum bicolor Sb04g029520 N 0.800
PK16956.1 Cannabis sativa PK16956.1 N 0.791
GRMZM2G029029 Zea mays GRMZM2G029029 N 0.785
PDK_20s1419021g001 Phoenix dactylifera PDK_20s1419021g001 N 0.783
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.779
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.770
LOC_Os02g49080 Oryza sativa LOC_Os02g49080 N 0.769
BGIOSIBCE008472 Oryza indica BGIOSIBCE008472 N 0.769
estExt_fgenesh1_pm.C_2690009 Physcomitrella patens estExt_fgenesh1_pm.C_2690009 N 0.750
Cucsa.114230 Cucumis sativus Cucsa.114230 N 0.750
LOC_Os01g66300 Oryza sativa LOC_Os01g66300 N 0.750
Medtr2g005410 Medicago truncatula Medtr2g005410 N 0.750
BGIOSIBCE004530 Oryza indica BGIOSIBCE004530 N 0.750
BRADI3G22307 Brachypodium distachyon BRADI3G22307 N 0.750
GSVIVG00023231001 Vitis vinifera GSVIVG00023231001 N 0.738
SB03G042090 Sorghum bicolor Sb03g042090 N 0.733
BRADI2G57220 Brachypodium distachyon BRADI2G57220 N 0.721
AT1G09660 Arabidopsis thaliana AT1G09660-TAIR-G N 0.717
e_gw1.35.311.1 Selaginella moellendorfii e_gw1.35.311.1 N 0.717
e_gw1.23.297.1 Selaginella moellendorfii e_gw1.23.297.1 N 0.717
XM_002892469.1 Arabidopsis lyrata fgenesh2_kg.1__1021__AT1G09660.1 N 0.717
GRMZM2G125531 Zea mays GRMZM2G125531 N 0.714
28128.m000156 Ricinus communis 28128.m000156 N 0.711