estExt_fgenesh1_pm.C_2690009 (Physcomitrella patens)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 estExt_fgenesh1_pm.C_2690009 T20866_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_2690009 KH 130 188

Links

Other KH family RBPs
Other Physcomitrella patens RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.869
e_gw1.23.297.1 Selaginella moellendorfii e_gw1.23.297.1 N 0.814
AT4G26480 Arabidopsis thaliana AT4G26480-TAIR-G N 0.800
SB03G042090 Sorghum bicolor Sb03g042090 N 0.797
Medtr3g016780 Medicago truncatula Medtr3g016780 N 0.787
LOC_Os01g66300 Oryza sativa LOC_Os01g66300 N 0.783
BGIOSIBCE004530 Oryza indica BGIOSIBCE004530 N 0.783
XM_002867517.1 Arabidopsis lyrata fgenesh2_kg.7__1597__AT4G26480.1 N 0.770
chr3.CM0047.410.nc Lotus japonicus chr3.CM0047.410.nc N 0.770
e_gw1.35.311.1 Selaginella moellendorfii e_gw1.35.311.1 N 0.767
XM_002864390.1 Arabidopsis lyrata fgenesh2_kg.8__1516__AT5G56140.1 N 0.758
AT5G56140 Arabidopsis thaliana AT5G56140-TAIR-G N 0.758
BRADI2G57220 Brachypodium distachyon BRADI2G57220 N 0.754
cassava412.valid.m1 Manihot esculenta cassava412.valid.m1 N 0.750
cassava410.valid.m1 Manihot esculenta cassava410.valid.m1 N 0.750
cassava411.valid.m1 Manihot esculenta cassava411.valid.m1 N 0.750
estExt_gwp_gw1.C_680211 Physcomitrella patens estExt_gwp_gw1.C_680211 N 0.747
GRMZM2G125531 Zea mays GRMZM2G125531 N 0.746
Medtr2g005410 Medicago truncatula Medtr2g005410 N 0.746
mgf006761m Mimulus guttatus mgf006761m N 0.738
GRMZM2G092182 Zea mays GRMZM2G092182 N 0.738
MDP0000306088 Malus x domestica MDP0000306088 N 0.730
Cucsa.114230 Cucumis sativus Cucsa.114230 N 0.729
Cucsa.334300 Cucumis sativus Cucsa.334300 N 0.723
LOC_Os05g34670 Oryza sativa LOC_Os05g34670 N 0.723
BGIOSIBCE008472 Oryza indica BGIOSIBCE008472 N 0.723
LOC_Os02g49080 Oryza sativa LOC_Os02g49080 N 0.723
BGIOSIBCE019075 Oryza indica BGIOSIBCE019075 N 0.723
GSVIVG00023231001 Vitis vinifera GSVIVG00023231001 N 0.721
XM_002892469.1 Arabidopsis lyrata fgenesh2_kg.1__1021__AT1G09660.1 N 0.717
AT1G09660 Arabidopsis thaliana AT1G09660-TAIR-G N 0.717
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.712
GRMZM2G029029 Zea mays GRMZM2G029029 N 0.708
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.701