MDP0000306088 (Malus x domestica)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 MDP0000306088 T21847_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000306088 KH 249 311

Links

Other KH family RBPs
Other Malus x domestica RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009341m Prunus persica ppa009341m N 0.925
AT5G56140 Arabidopsis thaliana AT5G56140-TAIR-G N 0.905
XM_002864390.1 Arabidopsis lyrata fgenesh2_kg.8__1516__AT5G56140.1 N 0.905
Medtr3g016780 Medicago truncatula Medtr3g016780 N 0.905
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.894
XM_002867517.1 Arabidopsis lyrata fgenesh2_kg.7__1597__AT4G26480.1 N 0.889
mgf006761m Mimulus guttatus mgf006761m N 0.889
PK16956.1 Cannabis sativa PK16956.1 N 0.881
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.881
cassava412.valid.m1 Manihot esculenta cassava412.valid.m1 N 0.873
cassava411.valid.m1 Manihot esculenta cassava411.valid.m1 N 0.873
cassava410.valid.m1 Manihot esculenta cassava410.valid.m1 N 0.873
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.864
GRMZM2G029029 Zea mays GRMZM2G029029 N 0.862
LOC_Os02g49080 Oryza sativa LOC_Os02g49080 N 0.862
BGIOSIBCE008472 Oryza indica BGIOSIBCE008472 N 0.862
AT4G26480 Arabidopsis thaliana AT4G26480-TAIR-G N 0.857
chr3.CM0047.410.nc Lotus japonicus chr3.CM0047.410.nc N 0.857
Cucsa.334300 Cucumis sativus Cucsa.334300 N 0.846
SB04G029520 Sorghum bicolor Sb04g029520 N 0.846
GRMZM2G092182 Zea mays GRMZM2G092182 N 0.841
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.838
cassava30587.valid.m1 Manihot esculenta cassava30587.valid.m1 N 0.836
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.778
BRADI2G57220 Brachypodium distachyon BRADI2G57220 N 0.746
GRMZM2G125531 Zea mays GRMZM2G125531 N 0.746
PDK_20s1419021g001 Phoenix dactylifera PDK_20s1419021g001 N 0.746
BRADI3G22307 Brachypodium distachyon BRADI3G22307 N 0.746
LOC_Os05g34670 Oryza sativa LOC_Os05g34670 N 0.738
BGIOSIBCE019075 Oryza indica BGIOSIBCE019075 N 0.738
28128.m000156 Ricinus communis 28128.m000156 N 0.737
estExt_fgenesh1_pm.C_2690009 Physcomitrella patens estExt_fgenesh1_pm.C_2690009 N 0.730
GSVIVG00023231001 Vitis vinifera GSVIVG00023231001 N 0.714
e_gw1.23.297.1 Selaginella moellendorfii e_gw1.23.297.1 N 0.714
e_gw1.35.311.1 Selaginella moellendorfii e_gw1.35.311.1 N 0.714
cassava13904.valid.m1 Manihot esculenta cassava13904.valid.m1 N 0.708