cassava30587.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava30587.valid.m1 T20675_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30587.valid.m1 KH 149 213

Links

Other KH family RBPs
Other Manihot esculenta RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009341m Prunus persica ppa009341m N 0.910
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.910
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.896
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.896
PK16956.1 Cannabis sativa PK16956.1 N 0.881
GRMZM2G092182 Zea mays GRMZM2G092182 N 0.879
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.853
Cucsa.334300 Cucumis sativus Cucsa.334300 N 0.851
SB04G029520 Sorghum bicolor Sb04g029520 N 0.851
GRMZM2G029029 Zea mays GRMZM2G029029 N 0.836
MDP0000306088 Malus x domestica MDP0000306088 N 0.836
XM_002867517.1 Arabidopsis lyrata fgenesh2_kg.7__1597__AT4G26480.1 N 0.821
LOC_Os02g49080 Oryza sativa LOC_Os02g49080 N 0.821
BGIOSIBCE008472 Oryza indica BGIOSIBCE008472 N 0.821
XM_002864390.1 Arabidopsis lyrata fgenesh2_kg.8__1516__AT5G56140.1 N 0.806
cassava410.valid.m1 Manihot esculenta cassava410.valid.m1 N 0.806
cassava411.valid.m1 Manihot esculenta cassava411.valid.m1 N 0.806
AT5G56140 Arabidopsis thaliana AT5G56140-TAIR-G N 0.806
cassava412.valid.m1 Manihot esculenta cassava412.valid.m1 N 0.806
28128.m000156 Ricinus communis 28128.m000156 N 0.803
mgf006761m Mimulus guttatus mgf006761m N 0.791
Medtr3g016780 Medicago truncatula Medtr3g016780 N 0.791
AT4G26480 Arabidopsis thaliana AT4G26480-TAIR-G N 0.791
chr3.CM0047.410.nc Lotus japonicus chr3.CM0047.410.nc N 0.791
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.746
LOC_Os05g34670 Oryza sativa LOC_Os05g34670 N 0.731
GRMZM2G125531 Zea mays GRMZM2G125531 N 0.731
BGIOSIBCE019075 Oryza indica BGIOSIBCE019075 N 0.731
A9PGC0_POPTR Populus trichocarpa POPTR_0011s17110 N 0.729
POPTR_0001s47500 Populus trichocarpa POPTR_0001s47500 N 0.729
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.716
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.712
estExt_gwp_gw1.C_680211 Physcomitrella patens estExt_gwp_gw1.C_680211 N 0.707
cassava13904.valid.m1 Manihot esculenta cassava13904.valid.m1 N 0.701
BRADI3G22307 Brachypodium distachyon BRADI3G22307 N 0.701