CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCHOG00000008967
(
Choloepus hoffmanni
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSCHOG00000008967
T23352_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000007930
La
1
54
FWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS
ENSCHOP00000007930
RRM
85
139
YVHSWIERIFGKCGNIVYISILHYKSIGDPKGFAFVESETKKQASKVIEFLNNPP
Links
Other
La,RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LARP7
Dasypus novemcinctus
ENSDNOG00000013761
N
0.818
LARP7
Tarsius syrichta
ENSTSYG00000006769
N
0.798
LARP7
Vicugna pacos
ENSVPAG00000010502
N
0.798
LARP7
Equus caballus
ENSECAG00000000834
N
0.798
Q0P5K0_BOVIN
Bos taurus
ENSBTAG00000009632
N
0.798
LARP7
Pan troglodytes
ENSPTRG00000016380
N
0.790
LARP7
Sus scrofa
ENSSSCG00000009119
N
0.790
LARP7
Tupaia belangeri
ENSTBEG00000009188
N
0.790
LARP7
Callithrix jacchus
ENSCJAG00000003711
N
0.790
ENSGGOG00000023567
Gorilla gorilla
ENSGGOG00000023567
N
0.790
LARP7
Homo sapiens
ENSG00000174720
N
0.790
ENSDORG00000008896
Dipodomys ordii
ENSDORG00000008896
N
0.790
LARP7
Otolemur garnettii
ENSOGAG00000001643
N
0.789
LARP7
Oryctolagus cuniculus
ENSOCUG00000007073
N
0.782
LARP7
Erinaceus europaeus
ENSEEUG00000012824
N
0.774
LARP7
Pteropus vampyrus
ENSPVAG00000000282
N
0.774
Q5ZIT4_CHICK
Gallus gallus
ENSGALG00000012048
N
0.766
LARP7
Anolis carolinensis
ENSACAG00000010662
N
0.742
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.738
ENSCJAG00000009340
Callithrix jacchus
ENSCJAG00000009340
N
0.727