CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000009340
(
Callithrix jacchus
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSCJAG00000009340
T23356_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000017111
La
30
89
IAKQVDFWFGDANLHKERFLREQIEKSRDGYVDISLLVSFNKMKKWTADGKLIARALRSS
ENSCJAP00000017111
RRM
121
177
EFLPQNVNNSWLERVFGKCGNVVYIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLSN
Links
Other
La,RRM
family RBPs
Other
Callithrix jacchus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LARP7
Dasypus novemcinctus
ENSDNOG00000013761
N
0.893
ENSGGOG00000023567
Gorilla gorilla
ENSGGOG00000023567
N
0.879
LARP7
Pan troglodytes
ENSPTRG00000016380
N
0.879
LARP7
Homo sapiens
ENSG00000174720
N
0.879
LARP7
Callithrix jacchus
ENSCJAG00000003711
N
0.879
LARP7
Tarsius syrichta
ENSTSYG00000006769
N
0.871
LARP7
Equus caballus
ENSECAG00000000834
N
0.871
LARP7
Vicugna pacos
ENSVPAG00000010502
N
0.871
LARP7
Tupaia belangeri
ENSTBEG00000009188
N
0.863
LARP7
Pteropus vampyrus
ENSPVAG00000000282
N
0.863
LARP7
Sus scrofa
ENSSSCG00000009119
N
0.863
Q0P5K0_BOVIN
Bos taurus
ENSBTAG00000009632
N
0.863
LARP7
Oryctolagus cuniculus
ENSOCUG00000007073
N
0.863
ENSDORG00000008896
Dipodomys ordii
ENSDORG00000008896
N
0.863
LARP7
Erinaceus europaeus
ENSEEUG00000012824
N
0.855
LARP7
Otolemur garnettii
ENSOGAG00000001643
N
0.847
Q5ZIT4_CHICK
Gallus gallus
ENSGALG00000012048
N
0.839
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.817
LARP7
Anolis carolinensis
ENSACAG00000010662
N
0.815
ENSCHOG00000008967
Choloepus hoffmanni
ENSCHOG00000008967
N
0.727