CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP7
(
Sus scrofa
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSSSCG00000009119
T23433_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000009726
La
38
97
IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSS
ENSSSCP00000009726
RRM
127
190
VYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPP
Links
Other
La,RRM
family RBPs
Other
Sus scrofa
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LARP7
Vicugna pacos
ENSVPAG00000010502
N
0.992
LARP7
Tarsius syrichta
ENSTSYG00000006769
N
0.992
LARP7
Equus caballus
ENSECAG00000000834
N
0.992
ENSDORG00000008896
Dipodomys ordii
ENSDORG00000008896
N
0.984
LARP7
Tupaia belangeri
ENSTBEG00000009188
N
0.984
ENSGGOG00000023567
Gorilla gorilla
ENSGGOG00000023567
N
0.984
LARP7
Pan troglodytes
ENSPTRG00000016380
N
0.984
LARP7
Callithrix jacchus
ENSCJAG00000003711
N
0.984
LARP7
Homo sapiens
ENSG00000174720
N
0.984
Q0P5K0_BOVIN
Bos taurus
ENSBTAG00000009632
N
0.984
LARP7
Oryctolagus cuniculus
ENSOCUG00000007073
N
0.976
LARP7
Erinaceus europaeus
ENSEEUG00000012824
N
0.968
LARP7
Dasypus novemcinctus
ENSDNOG00000013761
N
0.968
LARP7
Pteropus vampyrus
ENSPVAG00000000282
N
0.960
Q5ZIT4_CHICK
Gallus gallus
ENSGALG00000012048
N
0.952
LARP7
Otolemur garnettii
ENSOGAG00000001643
N
0.944
LARP7
Anolis carolinensis
ENSACAG00000010662
N
0.944
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.913
ENSCJAG00000009340
Callithrix jacchus
ENSCJAG00000009340
N
0.863
LARP7
Tursiops truncatus
ENSTTRG00000005233
N
0.798
ENSCHOG00000008967
Choloepus hoffmanni
ENSCHOG00000008967
N
0.790
LARP7
Oryzias latipes
ENSORLG00000004978
N
0.782
LARP7
Takifugu rubripes
ENSTRUG00000004996
N
0.758
LARP7
Microcebus murinus
ENSMICG00000015160
N
0.750
LARP7
Gasterosteus aculeatus
ENSGACG00000019618
N
0.744
ENSGGOG00000006438
Gorilla gorilla
ENSGGOG00000006438
N
0.734