CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP7
(
Oryzias latipes
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSORLG00000004978
T23418_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000006276
La
40
99
VKKQVEFWFGDANLHKDRFLKKIIEESDDGYVDISVLTGFNRMKKLTTDPKLIARALKNS
ENSORLP00000006276
RRM
129
192
VYVELLPKDVSHSWIERVFSKCGNVTYVSIPRYRTTGDSKGFAFVEFENEEQAQKAIEMLNNPP
ENSORLP00000006279
La
40
99
VKKQVEFWFGDANLHKDRFLKKIIEESDDGYVDISVLTGFNRMKKLTTDPKLIARALKNS
ENSORLP00000006279
RRM
129
192
VYVELLPKDVSHSWIERVFSKCGNVTYVSIPRYRTTGDSKGFAFVEFENEEQAQKAIEMLNNPP
ENSORLP00000006283
La
40
99
VKKQVEFWFGDANLHKDRFLKKIIEESDDGYVDISVLTGFNRMKKLTTDPKLIARALKNS
ENSORLP00000006283
RRM
129
191
VYVELLPKDVSHSWIERVFSKCGNVTYVSIPRYRTTGDSKGFAFVEFENEEQAQKAIEVKPQF
ENSORLP00000006285
La
40
99
VKKQVEFWFGDANLHKDRFLKKIIEESDDGYVDISVLTGFNRMKKLTTDPKLIARALKNS
ENSORLP00000006285
RRM
129
193
VYVELLPKDVSHSWIERVFSKCGNVTYVSIPRYRTTGDSKGFAFVEFENEEQAQKAIEMLNNPPE
Links
Other
La,RRM
family RBPs
Other
Oryzias latipes
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LARP7
Gasterosteus aculeatus
ENSGACG00000019618
N
0.816
LARP7
Takifugu rubripes
ENSTRUG00000004996
N
0.798
LARP7
Oryctolagus cuniculus
ENSOCUG00000007073
N
0.790
LARP7
Equus caballus
ENSECAG00000000834
N
0.782
LARP7
Erinaceus europaeus
ENSEEUG00000012824
N
0.782
Q0P5K0_BOVIN
Bos taurus
ENSBTAG00000009632
N
0.782
ENSDORG00000008896
Dipodomys ordii
ENSDORG00000008896
N
0.782
LARP7
Vicugna pacos
ENSVPAG00000010502
N
0.782
LARP7
Sus scrofa
ENSSSCG00000009119
N
0.782
Q5ZIT4_CHICK
Gallus gallus
ENSGALG00000012048
N
0.782
LARP7
Tarsius syrichta
ENSTSYG00000006769
N
0.782
LARP7
Anolis carolinensis
ENSACAG00000010662
N
0.782
ENSGGOG00000023567
Gorilla gorilla
ENSGGOG00000023567
N
0.774
LARP7
Homo sapiens
ENSG00000174720
N
0.774
LARP7
Callithrix jacchus
ENSCJAG00000003711
N
0.774
LARP7
Pan troglodytes
ENSPTRG00000016380
N
0.774
LARP7
Tupaia belangeri
ENSTBEG00000009188
N
0.774
LARP7
Otolemur garnettii
ENSOGAG00000001643
N
0.766
LARP7
Pteropus vampyrus
ENSPVAG00000000282
N
0.766
LARP7
Dasypus novemcinctus
ENSDNOG00000013761
N
0.758
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.746