CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_220013
(
Postia placenta
)
PUF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
PF00076 (RRM_1)
IPR001313
IPR000504
estExt_Genewise1.C_220013
T25357_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_220013
RRM
1412
1484
LWIGNLDSSVTSEQLIHVFAPYGAIESLRLLPEKASHIPLTAFRAELTTECGFVNFVDQTDAIRAKEDVLNRL
estExt_Genewise1.C_220013
RRM
1553
1616
LWIGSIPSTTTPATILSVFSPYGPIESARVLTHKNCGFINFERLDDAVRARKALNGRDVLGSDV
estExt_Genewise1.C_220013
PUF
1793
1823
FLDGEIVDLASDWLGNTVVQKLFEKCSPGPR
estExt_Genewise1.C_220013
PUF
1829
1864
RISPHLAMIGIHKNGTWAAQKIIECVQTPDEVALIT
estExt_Genewise1.C_220013
PUF
1867
1899
LRPYVPPLLLDQFGNYVVQCCLRFGAPATDFLF
estExt_Genewise1.C_220013
PUF
1901
1936
AMVDRLWEIAQGRFGARSMRACLESSHITLSQQRRI
estExt_Genewise1.C_220013
PUF
1939
1973
AIILNSIPLATNPNGALLLTWLLDTSSFPSRYNLL
Links
Other
PUF,RRM
family RBPs
Other
Postia placenta
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.868
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.859
estExt_fgenesh2_pg.C_200047
Serpula lacrymans
estExt_fgenesh2_pg.C_200047
N
0.853
EuGene2000855
Heterobasidion annosum
EuGene2000855
N
0.852
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.841
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.837
CC1G_13963
Coprinopsis cinerea
CC1G_13963
N
0.836