CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EuGene2000855
(
Heterobasidion annosum
)
PUF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
PF00076 (RRM_1)
IPR001313
IPR000504
EuGene2000855
T25397_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EuGene2000855
RRM
450
508
LWIGNLDSSVTSEQLIHVFAPYGAIESLRLLPEKECGFVNFVDLADAVRAKEDVLNRLG
EuGene2000855
RRM
574
637
LWIGSIPSTTTPATILSVFSPYGPIESARVLTHKNCGFINFERLDDAVRARKALNGRDVLGSDV
EuGene2000855
PUF
816
849
FLDGEIVDLASDWLGNTVVQKLFEKCSTQARLAM
EuGene2000855
PUF
853
886
IGPHLAMIGIHKNGTWAAQKIIDCVQTPEEVALI
EuGene2000855
PUF
890
922
LRPYAPPLLLDQFGNYVIQCCLRFGGPADDFIF
EuGene2000855
PUF
924
959
AMVDRLWDVAQGRFGARSMRACLESPNISINQQRRI
EuGene2000855
PUF
962
995
AIILNSIPLATNPNGALLLTWLLDTSGFPSRYLL
Links
Other
PUF,RRM
family RBPs
Other
Heterobasidion annosum
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_13963
Coprinopsis cinerea
CC1G_13963
N
0.898
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.895
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.888
estExt_fgenesh2_pg.C_200047
Serpula lacrymans
estExt_fgenesh2_pg.C_200047
N
0.885
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.882
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.875
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.852