CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_200047
(
Serpula lacrymans
)
PUF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
PF00076 (RRM_1)
IPR001313
IPR000504
estExt_fgenesh2_pg.C_200047
T25393_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_200047
RRM
584
642
LWIGNLDSAVTSEQLIHVFAPYGAIESLRLLPEKECGFVNFVDQGDAIRAKDDVLNRLG
estExt_fgenesh2_pg.C_200047
RRM
708
771
LWIGSIPSTTTPATILSVFSPYGPIESARVLTHKNCGFINFERLDDAVRARKALNGRDVLGSDV
estExt_fgenesh2_pg.C_200047
PUF
949
983
FLDGEIVDLASDWLGNTVVQKLFERCSAVPRFAML
estExt_fgenesh2_pg.C_200047
PUF
986
1020
ITPNLAMIGIHKNGTWAAQKIIECVQSPEEVALIV
estExt_fgenesh2_pg.C_200047
PUF
1023
1055
LRAYAPPLLLDQFGNYVVQCCLRFGAPANDFIF
estExt_fgenesh2_pg.C_200047
PUF
1057
1092
AMVDRMWEVAQGRFGARSMRACLESPHITLSQQRRI
estExt_fgenesh2_pg.C_200047
PUF
1096
1126
VILNSIPLATNPNGALLLTWLLDTSAFPSRI
Links
Other
PUF,RRM
family RBPs
Other
Serpula lacrymans
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.936
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.916
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.916
CC1G_13963
Coprinopsis cinerea
CC1G_13963
N
0.886
EuGene2000855
Heterobasidion annosum
EuGene2000855
N
0.885
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.875
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.853