CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA18503-RA
(
Drosophila pseudoobscura
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0078505
T25692_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0280860
RRM
220
292
IILFGLQKHVTEADIMGELIKVNMEPTSIRVMRKQPTGASRCFAFVEFKTVEESRQWMEITKGTLQLGDHRVS
FBpp0280860
RanBP ZF
299
328
RMSDWTCIKCGASNFKRRFQCFMCSASREE
FBpp0280860
RRM
351
429
IMLRNLDALTNEEGVLTALQQLQPKLAKSVSKVLISRDTLTQASRGICYLHFDTLVDSMELHNALTALDPPLTLDDREV
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GL15618
Drosophila persimilis
FBgn0153222
N
1.000
GL15620
Drosophila persimilis
FBgn0153224
N
1.000
GF15173
Drosophila ananassae
FBgn0092198
N
0.786
CG4887
Drosophila melanogaster
FBgn0031318
N
0.750
GM16803
Drosophila sechellia
FBgn0171716
N
0.750
GH11401
Drosophila grimshawi
FBgn0118881
N
0.743
GJ16951
Drosophila virilis
FBgn0204129
N
0.737
GI14534
Drosophila mojavensis
FBgn0137286
N
0.730
GK14959
Drosophila willistoni
FBgn0216964
N
0.730