CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ16951
(
Drosophila virilis
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0204129
T25718_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0231368
RRM
217
289
IIIFGLKKHITEADIMGALIQVNMEPSSIRLIRKRPTGASRGFAFVEFNTVEEATRWMDITQGTLKLGDQRVS
FBpp0231368
RanBP ZF
296
325
RITDWHCVKCGVYNFKRRFSCFMCMASRAE
FBpp0231368
RRM
348
417
IMLRNLDALTNEESVLTALQKVLPKLAKTINKVLISRDTLTQTSRGICYLNFETLVDSMDVHNALTTLDP
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila virilis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH11401
Drosophila grimshawi
FBgn0118881
N
0.983
GI14534
Drosophila mojavensis
FBgn0137286
N
0.931
GK14959
Drosophila willistoni
FBgn0216964
N
0.804
GF15173
Drosophila ananassae
FBgn0092198
N
0.790
GG24776
Drosophila erecta
FBgn0116906
N
0.755
GE17418
Drosophila yakuba
FBgn0234885
N
0.741
GL15620
Drosophila persimilis
FBgn0153224
N
0.737
GL15618
Drosophila persimilis
FBgn0153222
N
0.737
GA18503-RA
Drosophila pseudoobscura
FBgn0078505
N
0.737
GF15172
Drosophila ananassae
FBgn0092197
N
0.734
GM16803
Drosophila sechellia
FBgn0171716
N
0.715
CG4887
Drosophila melanogaster
FBgn0031318
N
0.715