CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH11401
(
Drosophila grimshawi
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0118881
T25701_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0145307
RRM
227
299
IIIFGLKKHITEADIMGALIQVNMEPSSIRLIRKRPTGASRGFAFVEFNTVEEATRWMEITQGTLKLGDQRVS
FBpp0145307
RanBP ZF
306
335
RITDWHCVKCGVYNFKRRFSCFMCMASRAE
FBpp0145307
RRM
358
427
IMLRNLDALTNEESVLTALQKVLPKLAKTIHKVLISRDTLTQTSRGICYLIFETLVDSMDVHNALTTLDP
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila grimshawi
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GJ16951
Drosophila virilis
FBgn0204129
N
0.983
GI14534
Drosophila mojavensis
FBgn0137286
N
0.925
GK14959
Drosophila willistoni
FBgn0216964
N
0.811
GF15173
Drosophila ananassae
FBgn0092198
N
0.783
GG24776
Drosophila erecta
FBgn0116906
N
0.748
GL15618
Drosophila persimilis
FBgn0153222
N
0.743
GL15620
Drosophila persimilis
FBgn0153224
N
0.743
GA18503-RA
Drosophila pseudoobscura
FBgn0078505
N
0.743
GE17418
Drosophila yakuba
FBgn0234885
N
0.734
GF15172
Drosophila ananassae
FBgn0092197
N
0.720
CG4887
Drosophila melanogaster
FBgn0031318
N
0.709
GM16803
Drosophila sechellia
FBgn0171716
N
0.709