CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM16803
(
Drosophila sechellia
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0171716
T25712_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0198280
RRM
261
333
IIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVEFNTVEEAKQWMDITQGVLKLNDERVS
FBpp0198280
RanBP ZF
340
369
RIQDWNCNKCGVCNFKFRFYCFVCKTSRED
FBpp0198280
RRM
393
469
MLRNLDALTNEEAVLTALQLHLKDLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRV
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila sechellia
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG4887
Drosophila melanogaster
FBgn0031318
N
1.000
GG24776
Drosophila erecta
FBgn0116906
N
0.934
GE17418
Drosophila yakuba
FBgn0234885
N
0.923
GF15172
Drosophila ananassae
FBgn0092197
N
0.807
GL15618
Drosophila persimilis
FBgn0153222
N
0.750
GA18503-RA
Drosophila pseudoobscura
FBgn0078505
N
0.750
GL15620
Drosophila persimilis
FBgn0153224
N
0.750
GI14534
Drosophila mojavensis
FBgn0137286
N
0.715
GF15173
Drosophila ananassae
FBgn0092198
N
0.715
GJ16951
Drosophila virilis
FBgn0204129
N
0.715
GH11401
Drosophila grimshawi
FBgn0118881
N
0.709