Ppa-rnp-4 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA11325 T45771_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PPA11325 RRM 56 126

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN21335 Caenorhabditis brenneri CBN21335 N 0.746
CRE20368 Caenorhabditis remanei CRE20368 I 0.746
rbm8a Danio rerio ENSDARG00000016516 I 0.746
CBG18074 Caenorhabditis briggsae CBG18074 I 0.732
CJA17011 Caenorhabditis japonica CJA17011 I 0.732
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.718
rnp-4 Caenorhabditis elegans R07E5.14 N 0.718
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.718
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.704
WUBG_00553 Wuchereria bancrofti WUBG_00553 N 0.704
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.704
Bm1_46120 Brugia malayi Bm1_46120 N 0.704
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.704
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.704
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.704
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.704
AAG27092 Xenopus laevis AAG27092 I 0.704
AAH56659 Xenopus laevis AAH56659 I 0.704
Q9DF42 Xenopus laevis Q9DF42 I 0.704
Q6PH90 Xenopus laevis Q6PH90 I 0.704
AAH73361 Xenopus laevis AAH73361 I 0.704
LOAG_04407 Loa loa LOAG_04407 N 0.704