CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_03345
(
Candida parapsilosis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPAG_03345
T28842_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_03345.1
RRM
412
474
LFIGGVPRNMDERALAQVLRPFAEIQSVILNSERKHAFVKVYSRSEAEKIITSFNKDNSLPLR
Links
Other
RRM
family RBPs
Other
Candida parapsilosis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CTRG_05353
Candida tropicalis
CTRG_05353
N
0.810
DEHA0E12364g
Debaryomyces hansenii
DEHA0E12364g
N
0.810
Cd36_51490
Candida dubliniensis
Cd36_51490
N
0.794
orf19.581
Candida albicans
orf19.581
N
0.794
17978_YNL251C
Saccharomyces mikatae
17978_YNL251C
N
0.746
CLUG_00870
Candida lusitaniae
CLUG_00870
N
0.730