CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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17978_YNL251C
(
Saccharomyces mikatae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
17978_YNL251C
T55135_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
17978_YNL251C
RRM
340
401
LFIGGVPLNMKEWDLANVLRPFAEVQSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGSLPL
Links
Other
RRM
family RBPs
Other
Saccharomyces mikatae
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
18402_YNL251C
Saccharomyces paradoxus
18402_YNL251C
N
0.919
NRD1
Saccharomyces cerevisiae
YNL251C
N
0.919
19777_Multiple
Saccharomyces bayanus
19777_Multiple
N
0.903
A7TF47_VANPO
Vanderwaltozyma polyspora
A7TF47_VANPO
N
0.806
Kwal_13522
Kluyveromyces waltii
Kwal_13522
N
0.774
KLTH0F02992g
Kluyveromyces thermotolerans
KLTH0F02992g
N
0.774
CPAG_03345
Candida parapsilosis
CPAG_03345
N
0.746
DEHA0E12364g
Debaryomyces hansenii
DEHA0E12364g
N
0.726
CLUG_00870
Candida lusitaniae
CLUG_00870
N
0.710