CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DEHA0E12364g
(
Debaryomyces hansenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DEHA0E12364g
T29184_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DEHA0E12364g.1
RRM
399
458
LFIGGVPRNMDEKELASVLRPYAEVQSVILNSERKHAFVKVYSRREAEQVITSFNKDNAL
Links
Other
RRM
family RBPs
Other
Debaryomyces hansenii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CLUG_00870
Candida lusitaniae
CLUG_00870
N
0.883
Cd36_51490
Candida dubliniensis
Cd36_51490
N
0.867
CTRG_05353
Candida tropicalis
CTRG_05353
N
0.867
orf19.581
Candida albicans
orf19.581
N
0.867
CPAG_03345
Candida parapsilosis
CPAG_03345
N
0.810
19777_Multiple
Saccharomyces bayanus
19777_Multiple
N
0.750
A7TF47_VANPO
Vanderwaltozyma polyspora
A7TF47_VANPO
N
0.733
NRD1
Saccharomyces cerevisiae
YNL251C
N
0.733
18402_YNL251C
Saccharomyces paradoxus
18402_YNL251C
N
0.733
17978_YNL251C
Saccharomyces mikatae
17978_YNL251C
N
0.726
Kwal_13522
Kluyveromyces waltii
Kwal_13522
N
0.700
KLTH0F02992g
Kluyveromyces thermotolerans
KLTH0F02992g
N
0.700