CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CLUG_00870
(
Candida lusitaniae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CLUG_00870
T28710_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLUT_00870
RRM
456
514
LFIGGVPRGMDEKQLASHLRPYAEVQSVILNSERKHAFVKVYSRKEAEQVIQSFNKDGA
Links
Other
RRM
family RBPs
Other
Candida lusitaniae
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DEHA0E12364g
Debaryomyces hansenii
DEHA0E12364g
N
0.883
Cd36_51490
Candida dubliniensis
Cd36_51490
N
0.831
orf19.581
Candida albicans
orf19.581
N
0.831
CTRG_05353
Candida tropicalis
CTRG_05353
N
0.831
19777_Multiple
Saccharomyces bayanus
19777_Multiple
N
0.763
18402_YNL251C
Saccharomyces paradoxus
18402_YNL251C
N
0.746
NRD1
Saccharomyces cerevisiae
YNL251C
N
0.746
CPAG_03345
Candida parapsilosis
CPAG_03345
N
0.730
A7TF47_VANPO
Vanderwaltozyma polyspora
A7TF47_VANPO
N
0.729
KLTH0F02992g
Kluyveromyces thermotolerans
KLTH0F02992g
N
0.712
Kwal_13522
Kluyveromyces waltii
Kwal_13522
N
0.712
17978_YNL251C
Saccharomyces mikatae
17978_YNL251C
N
0.710