CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABG_07859
(
Paracoccidioides brasiliensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PABG_07859
T29971_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PABG_07859T0
RRM
15
85
VYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEYAARIMNQVRLYGKPIR
PABG_07859T0
RRM
103
171
LFIGNLDPMVTEQILYDTFSRFGSLISAPKIARDDANLSKGYGFVSFSNFEASDDAIANMNGRYLMNKG
Links
Other
RRM
family RBPs
Other
Paracoccidioides brasiliensis
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_09421
Blastomyces dermatitidis
BDBG_09421
N
0.958
HCAG_06893
Histoplasma capsulatum
HCAG_06893
N
0.951
UREG_03156
Uncinocarpus reesii
UREG_03156
N
0.923
CIMG_02600
Coccidioides immitis
CIMG_02600
N
0.915
CPSG_00446
Coccidioides posadasii
CPSG_00446
N
0.915
ARB_04284
Arthroderma benhamiae
ARB_04284
N
0.908
TERG_06435
Trichophyton rubrum
TERG_06435
N
0.908
TRV_00155
Trichophyton verrucosum
TRV_00155
N
0.908
MCYG_05258
Microsporum canis
MCYG_05258
N
0.908
MGYG_06302
Microsporum gypseum
MGYG_06302
N
0.908
PMAA_011470
Penicillium marneffei
PMAA_011470
N
0.894
SS1G_09077
Sclerotinia sclerotiorum
SS1G_09077
N
0.887
BC1G_13457
Botrytis cinerea
BC1G_13457
N
0.887
AFLA_054780
Aspergillus flavus
CADAFLAG00006087
N
0.853
e_gw1.00735.103.1
Aspergillus carbonarius
e_gw1.00735.103.1
N
0.846
NFIA_051760
Neosartorya fischeri
CADNFIAG00005042
N
0.846
AFUA_6G05180
Aspergillus fumigatus
CADAFUAG00000741
N
0.846
ACLA_095350
Aspergillus clavatus
CADACLAG00009128
N
0.846
An15g00100
Aspergillus niger
CADANGAG00011688
N
0.846
ANIA_06501
Aspergillus nidulans
CADANIAG00007269
N
0.839
ATEG_05656
Aspergillus terreus
CADATEAG00000804
N
0.824
Pc12g04780
Penicillium chrysogenum
Pc12g04780
N
0.811
GSTUMT00011313001
Tuber melanosporum
GSTUMT00011313001
N
0.789
TEQG_04730
Trichophyton equinum
TEQG_04730
N
0.782
estExt_Genewise1Plus.C_150062
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_150062
N
0.732
e_gw1.8.426.1
Mycosphaerella graminicola
e_gw1.8.426.1
N
0.725
estExt_Genewise1Plus.C_20198
Mucor circinelloides
estExt_Genewise1Plus.C_20198
I
0.720
RO3G_10200
Rhizopus oryzae
RO3G_10200
I
0.706