CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_150062
(
Mycosphaerella fijiensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_150062
T51386_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_150062
RRM
15
85
LYIGNLDERCSDALVWELMLQAGPVINVHLPKDRVTQSHQGYGFVEFGSEDDADYAVKIMNQIRLWGKPIR
estExt_Genewise1Plus.C_150062
RRM
112
182
LFVGNLDSMVDEKVLYDTFSRFGPLLATPKVARDDANLSKGYGFISYSTFESSDEAIEHMHGQFLMNKEIT
Links
Other
RRM
family RBPs
Other
Mycosphaerella fijiensis
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.8.426.1
Mycosphaerella graminicola
e_gw1.8.426.1
N
0.852
MGYG_06302
Microsporum gypseum
MGYG_06302
N
0.775
TERG_06435
Trichophyton rubrum
TERG_06435
N
0.775
TRV_00155
Trichophyton verrucosum
TRV_00155
N
0.775
ARB_04284
Arthroderma benhamiae
ARB_04284
N
0.775
MCYG_05258
Microsporum canis
MCYG_05258
N
0.775
CPSG_00446
Coccidioides posadasii
CPSG_00446
N
0.768
BDBG_09421
Blastomyces dermatitidis
BDBG_09421
N
0.768
CIMG_02600
Coccidioides immitis
CIMG_02600
N
0.768
HCAG_06893
Histoplasma capsulatum
HCAG_06893
N
0.761
PMAA_011470
Penicillium marneffei
PMAA_011470
N
0.761
UREG_03156
Uncinocarpus reesii
UREG_03156
N
0.761
ANIA_06501
Aspergillus nidulans
CADANIAG00007269
N
0.755
e_gw1.00735.103.1
Aspergillus carbonarius
e_gw1.00735.103.1
N
0.755
GSTUMT00011313001
Tuber melanosporum
GSTUMT00011313001
N
0.754
An15g00100
Aspergillus niger
CADANGAG00011688
N
0.748
NFIA_051760
Neosartorya fischeri
CADNFIAG00005042
N
0.741
ACLA_095350
Aspergillus clavatus
CADACLAG00009128
N
0.741
AFUA_6G05180
Aspergillus fumigatus
CADAFUAG00000741
N
0.741
Pc12g04780
Penicillium chrysogenum
Pc12g04780
N
0.741
AFLA_054780
Aspergillus flavus
CADAFLAG00006087
N
0.741
SS1G_09077
Sclerotinia sclerotiorum
SS1G_09077
N
0.732
BC1G_13457
Botrytis cinerea
BC1G_13457
N
0.732
PABG_07859
Paracoccidioides brasiliensis
PABG_07859
N
0.732
e_gw1.2.1555.1
Heterobasidion annosum
e_gw1.2.1555.1
N
0.727
genemark.276_g
Pleurotus ostreatus
genemark.276_g
N
0.727
estExt_Genewise1Plus.C_920074
Postia placenta
estExt_Genewise1Plus.C_920074
I
0.727
CC1G_10837
Coprinopsis cinerea
CC1G_10837
N
0.727
estExt_fgenesh2_pm.C_20717
Agaricus bisporus
estExt_fgenesh2_pm.C_20717
N
0.720
e_gwh2.1.820.1
Phanerochaete chrysosporium
e_gwh2.1.820.1
N
0.720
ATEG_05656
Aspergillus terreus
CADATEAG00000804
N
0.716
estExt_fgenesh1_kg.C_70028
Melampsora laricis populina
estExt_fgenesh1_kg.C_70028
N
0.713
e_gw1.2.2306.1
Schizophyllum commune
e_gw1.2.2306.1
I
0.713
RO3G_10200
Rhizopus oryzae
RO3G_10200
I
0.713
fgenesh2_kg.11_#_983_#_7076_1_CFOT
Serpula lacrymans
fgenesh2_kg.11_#_983_#_7076_1_CFOT
N
0.713
estExt_GeneWisePlus_worm.C_60233
Laccaria bicolor
estExt_GeneWisePlus_worm.C_60233
N
0.713
estExt_Genewise1Plus.C_330054
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_330054
I
0.706
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.706