ISCW024082 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW024082 T44910_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW024082-PA RRM 16 83

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM617060 Pediculus humanus PHUM617060 N 0.971
AAEL005909 Aedes aegypti AAEL005909 N 0.956
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.956
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.956
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.941
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.941
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.941
AGAP002780 Anopheles gambiae AGAP002780 N 0.941
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.941
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.941
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.941
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.928
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.926
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.926
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.926
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.926
sf3b14 Danio rerio ENSDARG00000009753 N 0.926
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.926
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.926
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.926
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.926
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.926
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.926
SF3B14 Gallus gallus ENSGALG00000016501 N 0.926
AC008073.5 Homo sapiens ENSG00000115128 N 0.926
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.926
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.926
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.926
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.926
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.926
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.926
AAH57709 Xenopus laevis AAH57709 N 0.926
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.926
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.926
LOC100056247 Equus caballus ENSECAG00000015618 N 0.926
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.926
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.926
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.926
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.926
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.926
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.926
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.926
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.926
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.926
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.926
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.926
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.926
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.912
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.912
GM13852 Drosophila sechellia FBgn0168783 N 0.899
GL22529 Drosophila persimilis FBgn0160121 N 0.899
GD13137 Drosophila simulans FBgn0184859 N 0.899
GJ12004 Drosophila virilis FBgn0199256 N 0.899
GK17258 Drosophila willistoni FBgn0219257 N 0.899
GE20495 Drosophila yakuba FBgn0068445 N 0.899
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.899
CG13298 Drosophila melanogaster FBgn0035692 N 0.899
GF10910 Drosophila ananassae FBgn0087950 N 0.899
GG14070 Drosophila erecta FBgn0106332 N 0.899
GH16287 Drosophila grimshawi FBgn0123758 N 0.899
GI13232 Drosophila mojavensis FBgn0135989 N 0.899
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.897
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.897
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.897
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.882
68671 Helobdella robusta 68671 N 0.882
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.882
Smp_032060 Schistosoma mansoni Smp_032060 N 0.882
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.882
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.868
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.868
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.855
LOAG_04189 Loa loa LOAG_04189 N 0.855
Minc01156 Meloidogyne incognita Minc01156 N 0.853
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.853
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.853
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.838
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.838
PPA24922 Pristionchus pacificus PPA24922 N 0.838
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.838
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.826
CBN08400 Caenorhabditis brenneri CBN08400 N 0.824
CBG06987 Caenorhabditis briggsae CBG06987 N 0.824
CRE22109 Caenorhabditis remanei CRE22109 N 0.824
CJA01433 Caenorhabditis japonica CJA01433 N 0.824
SB01G003790 Sorghum bicolor Sb01g003790 N 0.824
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.824
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.824
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.824
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.824
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.824
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.824
PITG_10282 Phytophthora infestans PITG_10282 N 0.812
s_454910 Phytophthora sojae s_454910 N 0.812
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.812
ppa013407m Prunus persica ppa013407m N 0.809
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.809
MDP0000185506 Malus x domestica MDP0000185506 N 0.809
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.809
ppa013405m Prunus persica ppa013405m N 0.809
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.809
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.809
PK21780.1 Cannabis sativa PK21780.1 N 0.809
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.809
29868.m000351 Ricinus communis 29868.m000351 N 0.809
mgf016428m Mimulus guttatus mgf016428m N 0.797
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.797
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.794
EDO06533.1 Babesia bovis EDO06533.1 N 0.794
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.794
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.794
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.783
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.783
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.783
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.783
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.783
TA13725 Theileria annulata TA13725 N 0.779
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.779
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.779
32497 Aureococcus anophagefferens 32497 N 0.770
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.768
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.768
PFL1200c Plasmodium falciparum PFL1200c N 0.765
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.765
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.765
MDP0000916880 Malus x domestica MDP0000916880 N 0.765
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.765
PVX_123875 Plasmodium vivax PVX_123875 N 0.765
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.765
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.754
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.750
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.739
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.739
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.739
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.739
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.739
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.739
TP02_0539 Theileria parva TP02_0539 N 0.735
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.735
PGTG_00327 Puccinia graminis PGTG_00327 N 0.721
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.721
PY07239 Plasmodium yoelii PY07239 N 0.721
EuGene.00070081 Melampsora laricis populina EuGene.00070081 N 0.721
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706