CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm600384
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm600384
T32275_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm600384
RRM
208
277
IRISNLSESTTDADLEELVKPFGAIQKLYLAKEKNTNSCKGFAYVHYKMRSEAAKAIERLHGHGYDHLIL
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm3734
Apis mellifera
amel4_ncbi_hmm3734
N
0.786
GM18870
Drosophila sechellia
FBgn0173773
N
0.729
GL23467
Drosophila persimilis
FBgn0161057
N
0.729
GL12937
Drosophila persimilis
FBgn0150543
N
0.729
GD24609
Drosophila simulans
FBgn0195937
N
0.729
GJ15710
Drosophila virilis
FBgn0202898
N
0.729
GE16936
Drosophila yakuba
FBgn0234424
N
0.729
GK16326
Drosophila willistoni
FBgn0218328
N
0.729
GH21559
Drosophila grimshawi
FBgn0129021
N
0.729
GI16065
Drosophila mojavensis
FBgn0138814
N
0.729
GF21942
Drosophila ananassae
FBgn0098942
N
0.729
GA10616-RA
Drosophila pseudoobscura
FBgn0070673
N
0.729
CG8636
Drosophila melanogaster
FBgn0029629
N
0.729
GG12605
Drosophila erecta
FBgn0104893
N
0.729
GA21226-RA
Drosophila pseudoobscura
FBgn0081214
N
0.729
GE11159
Drosophila yakuba
FBgn0228983
N
0.714
GE25664
Drosophila yakuba
FBgn0242726
N
0.714
GG23911
Drosophila erecta
FBgn0116050
N
0.714
GH17626
Drosophila grimshawi
FBgn0125096
N
0.714
GH17624
Drosophila grimshawi
FBgn0125094
N
0.714
GF23028
Drosophila ananassae
FBgn0100022
N
0.700
CpipJ_CPIJ000190
Culex pipiens
CpipJ_CPIJ000190
N
0.700
EIF3G_AEDAE
Aedes aegypti
AAEL012661
N
0.700
EIF3G_CULQU
Culex quinquefasciatus
CPIJ000190
N
0.700
EIF3G_AEDAE
Aedes aegypti
AAEL006851
N
0.700
GJ23035
Drosophila virilis
FBgn0210137
N
0.700
GI22232
Drosophila mojavensis
FBgn0144960
N
0.700
GK22449
Drosophila willistoni
FBgn0224426
N
0.700