CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ23035
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0210137
T44117_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0237452
RRM
181
250
VRISNLSESMTEDDLEELVKKIGPYTKMYLAREKNSGLCKGFAYVHFKYRKDAAEAIEILNGHGYDHLIL
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI22232
Drosophila mojavensis
FBgn0144960
N
0.986
GH14150
Drosophila grimshawi
FBgn0121626
N
0.943
CG10881
Drosophila melanogaster
FBgn0038796
N
0.900
GF23028
Drosophila ananassae
FBgn0100022
N
0.900
GM23111
Drosophila sechellia
FBgn0177979
N
0.900
GK22449
Drosophila willistoni
FBgn0224426
N
0.900
GD19352
Drosophila simulans
FBgn0190854
N
0.900
GH17624
Drosophila grimshawi
FBgn0125094
N
0.886
GG23911
Drosophila erecta
FBgn0116050
N
0.886
GH17626
Drosophila grimshawi
FBgn0125096
N
0.886
GG12605
Drosophila erecta
FBgn0104893
N
0.886
GL12937
Drosophila persimilis
FBgn0150543
N
0.886
GD24609
Drosophila simulans
FBgn0195937
N
0.886
GJ15710
Drosophila virilis
FBgn0202898
N
0.886
GM18870
Drosophila sechellia
FBgn0173773
N
0.886
GL23467
Drosophila persimilis
FBgn0161057
N
0.886
GI16065
Drosophila mojavensis
FBgn0138814
N
0.886
GH21559
Drosophila grimshawi
FBgn0129021
N
0.886
GA21226-RA
Drosophila pseudoobscura
FBgn0081214
N
0.886
GE16936
Drosophila yakuba
FBgn0234424
N
0.886
GE25664
Drosophila yakuba
FBgn0242726
N
0.886
GF21942
Drosophila ananassae
FBgn0098942
N
0.886
GE11159
Drosophila yakuba
FBgn0228983
N
0.886
CG8636
Drosophila melanogaster
FBgn0029629
N
0.886
GK16326
Drosophila willistoni
FBgn0218328
N
0.886
GA10616-RA
Drosophila pseudoobscura
FBgn0070673
N
0.886
CpipJ_CPIJ000190
Culex pipiens
CpipJ_CPIJ000190
N
0.829
EIF3G_AEDAE
Aedes aegypti
AAEL012661
N
0.829
EIF3G_CULQU
Culex quinquefasciatus
CPIJ000190
N
0.829
EIF3G_AEDAE
Aedes aegypti
AAEL006851
N
0.829
CPIJ015350
Culex quinquefasciatus
CPIJ015350
N
0.800
CpipJ_CPIJ015350
Culex pipiens
CpipJ_CPIJ015350
N
0.800
EIF3G_ANOGA
Anopheles gambiae
AGAP007668
N
0.771
nasonia_NCBI_hmm600384
Nasonia vitripennis
nasonia_NCBI_hmm600384
N
0.700