CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL010567
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL010567
T32397_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
fne
M115_0.6
Drosophila melanogaster
UUKDGUU
RNAcompete
Ray et al.(2013)
RNCMPT00120
0.782
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL010567-PA
RRM
59
107
LIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGNWTNSGSFLSFD
AAEL010567-PA
RRM
99
143
NSGSFLSFDVGQSLGYGFVNYHRAEDADKAINTFNGLRLQNKTIK
AAEL010567-PA
RRM
159
227
LYVSGLSKSMTQQDLEALFQPYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNGTTPKGAS
AAEL010567-PA
RRM
301
371
IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSLNGYTLGNRVLQ
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL006675
Aedes aegypti
AAEL006675
I
0.816
AAEL008516
Aedes aegypti
AAEL008516
I
0.812
AGAP009952
Anopheles gambiae
AGAP009952
I
0.799
PHUM065370
Pediculus humanus
PHUM065370
I
0.791
fne
Drosophila melanogaster
FBgn0086675
D
0.782
DGIL_AUG5s1005g4t1
Acyrtosiphon pisum
DGIL_AUG5s1005g4t1
I
0.779
GF21392
Drosophila ananassae
FBgn0098394
I
0.778
GA22283-RA
Drosophila pseudoobscura
FBgn0243690
I
0.774
GK25647
Drosophila willistoni
FBgn0227606
I
0.774
GL22975
Drosophila persimilis
FBgn0160565
I
0.774
fne
Drosophila yakuba
FBgn0067971
I
0.774
GG17743
Drosophila erecta
FBgn0109965
I
0.774
GH24423
Drosophila grimshawi
FBgn0131879
I
0.774
GI16282
Drosophila mojavensis
FBgn0139031
I
0.774
GJ16518
Drosophila virilis
FBgn0203702
I
0.774
GM11591
Drosophila sechellia
FBgn0166534
I
0.769
BGIBMGA013823
Bombyx mori
BGIBMGA013823
I
0.745