fne (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0086675 T43194_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fne
M115_0.6		 Drosophila melanogaster UUKDGUU RNAcompete
Ray et al.(2013)
RNCMPT00120 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M115_0.6 RRM 28 66
M115_0.6 RRM 73 116
M115_0.6 RRM 132 200
M115_0.6 RRM 275 345

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0073543 RRM 28 66
FBpp0073543 RRM 73 116
FBpp0073543 RRM 132 200
FBpp0073543 RRM 275 345
FBpp0112400 RRM 28 66
FBpp0112400 RRM 73 116
FBpp0112400 RRM 132 200
FBpp0112400 RRM 275 345
FBpp0297664 RRM 28 66
FBpp0297664 RRM 73 116
FBpp0297664 RRM 132 200
FBpp0297664 RRM 275 345
FBpp0297665 RRM 28 64
FBpp0297665 RRM 70 113
FBpp0297665 RRM 129 197
FBpp0297665 RRM 272 342
FBpp0300900 RRM 28 66
FBpp0300900 RRM 73 116
FBpp0300900 RRM 132 200
FBpp0300900 RRM 275 345
FBpp0300901 RRM 28 66
FBpp0300901 RRM 73 116
FBpp0300901 RRM 132 200
FBpp0300901 RRM 275 345

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ16518 Drosophila virilis FBgn0203702 I 1.000
GA22283-RA Drosophila pseudoobscura FBgn0243690 I 1.000
fne Drosophila yakuba FBgn0067971 I 1.000
GL22975 Drosophila persimilis FBgn0160565 I 1.000
GK25647 Drosophila willistoni FBgn0227606 I 1.000
GH24423 Drosophila grimshawi FBgn0131879 I 1.000
GG17743 Drosophila erecta FBgn0109965 I 1.000
GI16282 Drosophila mojavensis FBgn0139031 I 1.000
GM11591 Drosophila sechellia FBgn0166534 I 0.995
GF21392 Drosophila ananassae FBgn0098394 I 0.995
AAEL006675 Aedes aegypti AAEL006675 I 0.792
DGIL_AUG5s1005g4t1 Acyrtosiphon pisum DGIL_AUG5s1005g4t1 I 0.792
AGAP009952 Anopheles gambiae AGAP009952 I 0.789
PHUM065370 Pediculus humanus PHUM065370 I 0.788
AAEL008516 Aedes aegypti AAEL008516 I 0.782
AAEL010567 Aedes aegypti AAEL010567 I 0.782
BGIBMGA013823 Bombyx mori BGIBMGA013823 I 0.748
Q7SZT7 Xenopus laevis Q7SZT7 I 0.713
AAH56021 Xenopus laevis AAH56021 I 0.713
AAH43735 Xenopus laevis AAH43735 I 0.713
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.709
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.701