GSVIVG00038636001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00038636001 T44805_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00038636001 RRM 9 76
GSVIVT00038636001 RRM 114 177

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.962
PK08657.1 Cannabis sativa PK08657.1 N 0.955
29827.m002610 Ricinus communis 29827.m002610 N 0.947
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.924
mgf014175m Mimulus guttatus mgf014175m N 0.924
mgf000052m Mimulus guttatus mgf000052m N 0.924
mgf011321m Mimulus guttatus mgf011321m N 0.924
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.924
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.924
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.917
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.917
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.909
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.909
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.902
ppa017674m Prunus persica ppa017674m N 0.902
MDP0000200391 Malus x domestica MDP0000200391 N 0.894
MDP0000268577 Malus x domestica MDP0000268577 N 0.894
MDP0000857322 Malus x domestica MDP0000857322 N 0.886
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.886
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.799
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.799
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.797
SB01G035680 Sorghum bicolor Sb01g035680 N 0.791
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.778
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.776
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.770
SB03G013010 Sorghum bicolor Sb03g013010 N 0.770
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.770
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.770
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.770
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.770
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.770
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.767
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.763
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.763
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.763
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.763
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.759
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.756
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.756
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.756
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.756
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.756
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.756
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.756
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.756
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.756
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.754
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.748
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.748
29986.m001610 Ricinus communis 29986.m001610 N 0.748
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.748
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.748
30128.m008840 Ricinus communis 30128.m008840 N 0.748
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.748
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.741
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.741
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.741
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.741
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.733
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.733
ppa009045m Prunus persica ppa009045m N 0.733
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.733
ppa009033m Prunus persica ppa009033m N 0.733
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.733
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.733
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.733
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.733
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.731
MDP0000271362 Malus x domestica MDP0000271362 N 0.726
MDP0000231034 Malus x domestica MDP0000231034 N 0.726
ppa009968m Prunus persica ppa009968m N 0.719
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.719
ppa009360m Prunus persica ppa009360m N 0.719
PDK_20s1395611g001 Phoenix dactylifera PDK_20s1395611g001 N 0.714
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.711
LjT41H24.70.nd Lotus japonicus LjT41H24.70.nd N 0.705