At-SR34a (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G49430-TAIR-G T32755_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G49430.1-P RRM 9 76
AT3G49430.1-P RRM 124 187
AT3G49430.2-P RRM 9 76
AT3G49430.2-P RRM 124 187

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.985
PK08657.1 Cannabis sativa PK08657.1 N 0.909
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.909
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.902
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.902
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.894
mgf014175m Mimulus guttatus mgf014175m N 0.894
29827.m002610 Ricinus communis 29827.m002610 N 0.894
mgf000052m Mimulus guttatus mgf000052m N 0.894
mgf011321m Mimulus guttatus mgf011321m N 0.894
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.894
ppa017674m Prunus persica ppa017674m N 0.886
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.886
MDP0000200391 Malus x domestica MDP0000200391 N 0.879
MDP0000268577 Malus x domestica MDP0000268577 N 0.879
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.871
MDP0000857322 Malus x domestica MDP0000857322 N 0.871
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.871
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.856
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.827
SB01G035680 Sorghum bicolor Sb01g035680 N 0.821
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.813
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.813
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.807
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.806
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.793
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.785
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.785
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.785
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.782
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.782
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.778
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.778
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.776
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.770
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.770
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.763
SB03G013010 Sorghum bicolor Sb03g013010 N 0.763
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.756
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.756
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.756
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.756
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.748
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.748
ppa009360m Prunus persica ppa009360m N 0.748
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.748
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.748
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.748
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.748
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.748
ppa009968m Prunus persica ppa009968m N 0.748
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.746
ppa009033m Prunus persica ppa009033m N 0.741
ppa009045m Prunus persica ppa009045m N 0.741
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.741
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.741
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.741
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.741
30128.m008840 Ricinus communis 30128.m008840 N 0.741
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.741
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.741
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.741
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.741
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.741
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.741
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.741
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.741
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.733
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.733
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.733
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.733
29986.m001610 Ricinus communis 29986.m001610 N 0.733
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.733
MDP0000231034 Malus x domestica MDP0000231034 N 0.726
MDP0000271362 Malus x domestica MDP0000271362 N 0.719
LjT41H24.70.nd Lotus japonicus LjT41H24.70.nd N 0.712
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.711
PDK_20s1395611g001 Phoenix dactylifera PDK_20s1395611g001 N 0.707