Medtr3g122850 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g122850 T54483_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g122850.1 RRM 9 76
Medtr3g122850.1 RRM 125 188
Medtr3g122850.2 RRM 9 76
Medtr3g122850.2 RRM 125 188

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.977
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.977
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.962
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.932
mgf000052m Mimulus guttatus mgf000052m N 0.924
mgf014175m Mimulus guttatus mgf014175m N 0.924
mgf011321m Mimulus guttatus mgf011321m N 0.924
29827.m002610 Ricinus communis 29827.m002610 N 0.917
PK08657.1 Cannabis sativa PK08657.1 N 0.917
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.909
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.909
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.902
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.902
ppa017674m Prunus persica ppa017674m N 0.902
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.894
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.886
MDP0000268577 Malus x domestica MDP0000268577 N 0.886
MDP0000200391 Malus x domestica MDP0000200391 N 0.886
MDP0000857322 Malus x domestica MDP0000857322 N 0.879
SB01G035680 Sorghum bicolor Sb01g035680 N 0.813
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.813
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.812
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.806
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.800
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.791
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.789
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.778
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.774
LjT41H24.70.nd Lotus japonicus LjT41H24.70.nd N 0.773
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.770
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.770
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.770
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.770
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.770
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.770
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.763
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.763
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.763
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.763
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.756
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.756
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.756
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.756
ppa009045m Prunus persica ppa009045m N 0.756
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.756
ppa009033m Prunus persica ppa009033m N 0.756
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.756
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.756
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.756
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.756
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.756
30128.m008840 Ricinus communis 30128.m008840 N 0.756
SB03G013010 Sorghum bicolor Sb03g013010 N 0.756
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.756
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.754
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.754
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.748
29986.m001610 Ricinus communis 29986.m001610 N 0.748
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.748
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.748
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.748
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.748
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.748
ppa009968m Prunus persica ppa009968m N 0.741
ppa009360m Prunus persica ppa009360m N 0.741
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.741
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.741
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.741
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.741
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.733
MDP0000271362 Malus x domestica MDP0000271362 N 0.733
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.733
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.733
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.733
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.719
MDP0000231034 Malus x domestica MDP0000231034 N 0.711
PDK_20s1395611g001 Phoenix dactylifera PDK_20s1395611g001 N 0.707
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.704