BGIOSIBCE022665 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE022665 T33010_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE022665 RRM 35 93

Links

Other RRM family RBPs
Other Oryza indica RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 1.000
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.949
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.932
SB10G024450 Sorghum bicolor Sb10g024450 N 0.932
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.814
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.797
SB03G041530 Sorghum bicolor Sb03g041530 I 0.763
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.763
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.763
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.763
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.758
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.754
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.746
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.746
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.746
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.729
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.729
SB03G046430 Sorghum bicolor Sb03g046430 N 0.729
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.729
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.721
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.712
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.712
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.710
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.710
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.710
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.706