PDK_20s1420851g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1420851g001 T58137_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1420851g001 RRM 13 71

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.932
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.932
SB03G041530 Sorghum bicolor Sb03g041530 I 0.932
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.932
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.932
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.932
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.915
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.915
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.898
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.885
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.881
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.871
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.871
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.871
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.871
ppa009564m Prunus persica ppa009564m I 0.871
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.871
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.869
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.864
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.864
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.855
MDP0000271231 Malus x domestica MDP0000271231 N 0.855
30170.m013735 Ricinus communis 30170.m013735 I 0.855
MDP0000181802 Malus x domestica MDP0000181802 N 0.855
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.847
SB03G046430 Sorghum bicolor Sb03g046430 N 0.847
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.833
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.823
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.797
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.790
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.790
mgf002440m Mimulus guttatus mgf002440m N 0.790
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.779
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.776
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.776
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.770
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
PK21213.1 Cannabis sativa PK21213.1 I 0.761
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
mgf017214m Mimulus guttatus mgf017214m I 0.750
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
ppa009716m Prunus persica ppa009716m I 0.750
SB10G024450 Sorghum bicolor Sb10g024450 N 0.746
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.746
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.746
29983.m003293 Ricinus communis 29983.m003293 I 0.738
PK14266.1 Cannabis sativa PK14266.1 I 0.735
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.735
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.735
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.735
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
30076.m004440 Ricinus communis 30076.m004440 I 0.735
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
PDK_20s1523981g001 Phoenix dactylifera PDK_20s1523981g001 N 0.733
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.729
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.729
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.729
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.716
CU179634_3 Medicago truncatula CU179634_3 I 0.716
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.712
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.712
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.706
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706
MDP0000138486 Malus x domestica MDP0000138486 I 0.701