GSVIVG00013430001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00013430001 T44661_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.765
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00013430001 RRM 34 92

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.934
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.915
SB03G041530 Sorghum bicolor Sb03g041530 I 0.898
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.898
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.898
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.898
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.898
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.881
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.881
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.881
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.864
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.864
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
PK21213.1 Cannabis sativa PK21213.1 I 0.851
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.839
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.839
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.839
mgf017214m Mimulus guttatus mgf017214m I 0.838
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.836
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.836
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.836
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.831
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.831
SB03G046430 Sorghum bicolor Sb03g046430 N 0.831
30170.m013735 Ricinus communis 30170.m013735 I 0.823
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.820
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.809
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.806
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.806
ppa009564m Prunus persica ppa009564m I 0.806
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.806
CU179634_3 Medicago truncatula CU179634_3 I 0.806
MDP0000138486 Malus x domestica MDP0000138486 I 0.806
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.800
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.797
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.797
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.797
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.794
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.794
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
MDP0000181802 Malus x domestica MDP0000181802 N 0.790
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.790
MDP0000271231 Malus x domestica MDP0000271231 N 0.790
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.780
SB10G024450 Sorghum bicolor Sb10g024450 N 0.780
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.779
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.779
ppa009964m Prunus persica ppa009964m I 0.765
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.765
ppa009716m Prunus persica ppa009716m I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.765
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.765
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.765
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.763
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.758
mgf002440m Mimulus guttatus mgf002440m N 0.758
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.758
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.754
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
PK14266.1 Cannabis sativa PK14266.1 I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.750
30076.m004440 Ricinus communis 30076.m004440 I 0.750
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.750
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.746
MDP0000164846 Malus x domestica MDP0000164846 N 0.746
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.746
MDP0000244803 Malus x domestica MDP0000244803 N 0.746
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.735
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.735
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.735
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.735
29983.m003293 Ricinus communis 29983.m003293 I 0.723
29908.m006046 Ricinus communis 29908.m006046 I 0.721
MDP0000134468 Malus x domestica MDP0000134468 I 0.721
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.712
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
PK15672.1 Cannabis sativa PK15672.1 I 0.710
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
MDP0000233609 Malus x domestica MDP0000233609 I 0.706