cassava6634.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava6634.valid.m1 T49444_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava6634.valid.m1 RRM 18 79

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 1.000
ppa009564m Prunus persica ppa009564m I 0.968
30170.m013735 Ricinus communis 30170.m013735 I 0.968
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.968
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.968
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.952
MDP0000181802 Malus x domestica MDP0000181802 N 0.952
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.952
MDP0000271231 Malus x domestica MDP0000271231 N 0.952
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.935
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.935
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.935
SB03G041530 Sorghum bicolor Sb03g041530 I 0.903
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.903
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.903
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.903
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.903
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.887
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.887
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.871
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.871
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.871
mgf002440m Mimulus guttatus mgf002440m N 0.855
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.839
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.839
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.823
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.806
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.806
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.806
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.806
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.806
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.791
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.791
PK21213.1 Cannabis sativa PK21213.1 I 0.791
SB03G046430 Sorghum bicolor Sb03g046430 N 0.790
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.790
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.779
29983.m003293 Ricinus communis 29983.m003293 I 0.769
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.765
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
PK14266.1 Cannabis sativa PK14266.1 I 0.765
mgf017214m Mimulus guttatus mgf017214m I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.750
CU179634_3 Medicago truncatula CU179634_3 I 0.746
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.742
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.742
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
30076.m004440 Ricinus communis 30076.m004440 I 0.735
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.735
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.735
ppa009716m Prunus persica ppa009716m I 0.735
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.735
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
MDP0000138486 Malus x domestica MDP0000138486 I 0.716
ppa018603m Prunus persica ppa018603m I 0.710
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.710
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.710
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.710
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
29908.m006046 Ricinus communis 29908.m006046 I 0.706