XM_002893090.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__2278__AT1G20880.1 T44484_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2278__AT1G20880.1 RRM 26 84

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.935
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.898
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.885
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.881
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.864
SB03G041530 Sorghum bicolor Sb03g041530 I 0.864
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.864
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.864
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.847
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.847
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.847
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.847
SB10G024450 Sorghum bicolor Sb10g024450 N 0.831
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.831
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.831
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.831
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.821
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.814
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.814
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.814
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.814
SB03G046430 Sorghum bicolor Sb03g046430 N 0.814
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.809
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.809
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.806
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.806
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.806
PK21213.1 Cannabis sativa PK21213.1 I 0.806
MDP0000138486 Malus x domestica MDP0000138486 I 0.806
mgf017214m Mimulus guttatus mgf017214m I 0.794
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.794
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
MDP0000181802 Malus x domestica MDP0000181802 N 0.790
MDP0000271231 Malus x domestica MDP0000271231 N 0.790
30170.m013735 Ricinus communis 30170.m013735 I 0.790
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.787
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.780
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.780
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.779
ppa009964m Prunus persica ppa009964m I 0.779
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.779
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.779
CU179634_3 Medicago truncatula CU179634_3 I 0.776
ppa009564m Prunus persica ppa009564m I 0.774
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.774
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.774
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.767
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.758
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.758
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.758
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
mgf002440m Mimulus guttatus mgf002440m N 0.742
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.739
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.735
MDP0000244803 Malus x domestica MDP0000244803 N 0.729
MDP0000164846 Malus x domestica MDP0000164846 N 0.729
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.725
29983.m003293 Ricinus communis 29983.m003293 I 0.723
ppa009716m Prunus persica ppa009716m I 0.721
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.721
MDP0000488395 Malus x domestica MDP0000488395 I 0.721
MDP0000548950 Malus x domestica MDP0000548950 I 0.721
MDP0000744398 Malus x domestica MDP0000744398 I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.716
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.712
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
30076.m004440 Ricinus communis 30076.m004440 I 0.706
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.706
ppa016222m Prunus persica ppa016222m I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.706
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.706
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
PK14266.1 Cannabis sativa PK14266.1 I 0.706
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.706
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.705