CJA17900 (Caenorhabditis japonica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CJA17900 T34175_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.826
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA17900 RRM 119 187

Links

Other RRM family RBPs
Other Caenorhabditis japonica RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE06934 Caenorhabditis remanei CRE06934 I 0.826
asd-1 Caenorhabditis elegans R74.5 D 0.826
CBG20166 Caenorhabditis briggsae CBG20166 I 0.797
CJA09998 Caenorhabditis japonica CJA09998 I 0.783
CRE07377 Caenorhabditis remanei CRE07377 I 0.768
CBG02108 Caenorhabditis briggsae CBG02108 I 0.768
CBN11651 Caenorhabditis brenneri CBN11651 I 0.768
fox-1 Caenorhabditis elegans T07D1.4 D 0.768
CBN09445 Caenorhabditis brenneri CBN09445 I 0.768
LOAG_04679 Loa loa LOAG_04679 I 0.739
Bm1_08900 Brugia malayi Bm1_08900 I 0.739
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.739