CBG02108 (Caenorhabditis briggsae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBG02108 T33855_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.986
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.754
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.754
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.754
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.754
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBG02108 RRM 171 239

Links

Other RRM family RBPs
Other Caenorhabditis briggsae RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE07377 Caenorhabditis remanei CRE07377 I 0.986
fox-1 Caenorhabditis elegans T07D1.4 D 0.986
CJA09998 Caenorhabditis japonica CJA09998 I 0.971
CBN11651 Caenorhabditis brenneri CBN11651 I 0.971
LOAG_04679 Loa loa LOAG_04679 I 0.841
Bm1_08900 Brugia malayi Bm1_08900 I 0.841
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.841
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.768
CJA17900 Caenorhabditis japonica CJA17900 I 0.768
CBG20166 Caenorhabditis briggsae CBG20166 I 0.768
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.768
AGAP006089 Anopheles gambiae AGAP006089 I 0.768
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.754
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.754
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.754
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.754
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.754
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.754
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.754
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.754
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.754
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.754
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.754
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.754
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.754
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.754
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.754
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.754
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.754
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.754
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.754
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.754
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.754
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.754
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.754
GM25214 Drosophila sechellia FBgn0180074 I 0.754
GD14245 Drosophila simulans FBgn0185930 I 0.754
GI11474 Drosophila mojavensis FBgn0134235 I 0.754
GH14949 Drosophila grimshawi FBgn0122424 I 0.754
GG15438 Drosophila erecta FBgn0107689 I 0.754
GJ13667 Drosophila virilis FBgn0200888 I 0.754
GK12272 Drosophila willistoni FBgn0214282 I 0.754
AAEL017168 Aedes aegypti AAEL017168 I 0.754
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.754
PHUM098700 Pediculus humanus PHUM098700 I 0.754
GE21749 Drosophila yakuba FBgn0238995 I 0.754
GF10597 Drosophila ananassae FBgn0087638 I 0.754
a2bp1 Drosophila melanogaster FBgn0052062 D 0.754
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.754
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.754
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.754
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.754
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.754
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.754
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.754
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.754
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.754
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.754
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.754
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.754
a2bp1 Danio rerio ENSDARG00000014746 D 0.754
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.754
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.754
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.754
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.754
LOC100066233 Equus caballus ENSECAG00000012667 I 0.754
RBFOX2 Homo sapiens ENSG00000100320 I 0.754
A2BP1 Homo sapiens ENSG00000078328 D 0.754
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.754
LOC100069362 Equus caballus ENSECAG00000018923 I 0.754
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.754
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.754
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.754
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.754
CRE06934 Caenorhabditis remanei CRE06934 I 0.754
CBN09445 Caenorhabditis brenneri CBN09445 I 0.754
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.754
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.754
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.754
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.754
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.754
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.754
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.754
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.754
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.754
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.754
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.754
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.754
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.754
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.754
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.754
RBM9 Gallus gallus ENSGALG00000012540 I 0.754
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.754
A2BP1 Gallus gallus ENSGALG00000007366 I 0.754
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.739
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.739
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.739
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.739
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.739
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.739
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.739
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.739
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.739
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.739
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.739
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.739
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.739
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.739
CAL91351 Xenopus laevis CAL91351 I 0.739
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.739
A4F5G6 Xenopus laevis A4F5G6 I 0.739
CAL91350 Xenopus laevis CAL91350 I 0.739
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.739
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.739
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.739
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.739
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.739
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.739
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.739
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.739
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.739
FP236187.1 Danio rerio ENSDARG00000010083 I 0.739
RBFOX3 Homo sapiens ENSG00000167281 I 0.739
RBFOX3 Equus caballus ENSECAG00000023811 I 0.739
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.739
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.739
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.739
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.739
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.739
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.725
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.725
AAI69563 Xenopus laevis AAI69563 I 0.725
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.725
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.725
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.725
AAI55921 Xenopus laevis AAI55921 I 0.725
asd-1 Caenorhabditis elegans R74.5 D 0.725
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.725
rbfox1l Danio rerio ENSDARG00000021184 I 0.725
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.725
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.725
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.710
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.710
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.710
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.710
ISCW013123 Ixodes scapularis ISCW013123 I 0.710